Cryo-EM structure of the RC-LH core comples from Halorhodospira halochloris
Qi CH, Wang GL, Wang FF, Wang J, Wang XP, Zou MJ, Ma F, Madigan MT, Kimura Y, Wang-Otomo ZY, Yu LJ
J Integr Plant Biol (2024) 66 pp. 2262-2272 [ DOI: doi:10.1111/jipb.13628 Pubmed: 38411333 ]
- Light-harvesting lhi (7 kDa, Protein from Halorhodospira halochloris)
- Cardiolipin (1 kDa, Ligand)
- Trans-geranyl bacteriochlorophyll b (907 Da, Ligand)
- Rc-lh core complex (Complex from Halorhodospira halochloris)
- Photosynthetic reaction center h subunit (31 kDa, Protein from Halorhodospira halochloris)
- Antenna complex alpha/beta subunit domain-containing protein (7 kDa, Protein from Halorhodospira halochloris)
- Trans-geranyl bacteriopheophytin b (885 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Reaction center small polypeptide (3 kDa, Protein from Halorhodospira halochloris)
- Unknown ligand (909 Da, Ligand)
- Trans-geranyl 8-vinyl-bacteriochlorophyll b (907 Da, Ligand)
- Beta subunit of light-harvesting 1 (9 kDa, Protein from Halorhodospira halochloris)
- 2-o-octyl-beta-d-glucopyranose (292 Da, Ligand)
- Gamma subunit of light-harvesting 1 (3 kDa, Protein from Halorhodospira halochloris)
- Reaction center protein m chain (36 kDa, Protein from Halorhodospira halochloris)
- Reaction center protein l chain (31 kDa, Protein from Halorhodospira halochloris)
- Menaquinone 8 (717 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (41 kDa, Protein from Halorhodospira halochloris)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Ubiquinone-8 (727 Da, Ligand)
- Heme c (618 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Antenna complex alpha/beta subunit domain-containing protein (12 kDa, Protein from Halorhodospira halochloris)
- Lycopene (536 Da, Ligand)
- Di-palmitoyl-3-sn-phosphatidylethanolamine (691 Da, Ligand)
- Reactin center small polypeptide (3 kDa, Protein from Halorhodospira halochloris)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7c8k
Q-score: 0.482
Liu K, Tan S, Niu S, Wang J, Wu L, Sun H, Zhang Y, Pan X, Qu X, Du P, Meng Y, Jia Y, Chen Q, Deng C, Yan J, Wang HW, Wang Q, Qi J, Gao GF
PNAS (2021) 118 [ Pubmed: 33335073 DOI: doi:10.1073/pnas.2020216118 ]
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bat ace2 (Cell from Bat AAV SC2991)
- Angiotensin-converting enzyme (69 kDa, Protein from Rhinolophus macrotis)
The structure of human Integrator-PP2A complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7cun
Q-score: 0.35
Zheng H, Qi Y, Hu S, Cao X, Xu C, Yin Z, Chen X, Li Y, Liu W, Li J, Wang J, Wei G, Liang K, Chen FX, Xu Y
Science (2020) 370 [ Pubmed: 33243860 DOI: doi:10.1126/science.abb5872 ]
- Integrator complex subunit 1, 2, 4, 5, 6, 7, 8, 9, 11 (Complex from Homo sapiens)
- Integrator complex subunit 9 (73 kDa, Protein from Homo sapiens)
- Integrator complex subunit 11 (67 kDa, Protein from Homo sapiens)
- Pp2a-c (35 kDa, Protein from Homo sapiens)
- Human integrator-pp2a complex (Complex)
- Integrator complex subunit 7 (106 kDa, Protein from Homo sapiens)
- Unknown subunit (Complex from Homo sapiens)
- Integrator complex subunit 8 (113 kDa, Protein from Homo sapiens)
- Unknown (50 kDa, Protein from Homo sapiens)
- Manganese (ii) ion (54 Da, Ligand)
- Integrator complex subunit 4 (108 kDa, Protein from Homo sapiens)
- Integrator complex subunit 5 (108 kDa, Protein from Homo sapiens)
- Pp2a-a (66 kDa, Protein from Homo sapiens)
- Pp2a (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Integrator complex subunit 6 (100 kDa, Protein from Homo sapiens)
- Integrator complex subunit 2 (134 kDa, Protein from Homo sapiens)
- Integrator complex subunit 1 (244 kDa, Protein from Homo sapiens)
Cryo-EM structure of cat ACE2 and SARS-CoV-2 RBD
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7c8d
Q-score: 0.529
Wu L, Chen Q, Liu K, Wang J, Han P, Zhang Y, Hu Y, Meng Y, Pan X, Qiao C, Tian S, Du P, Song H, Shi W, Qi J, Wang HW, Yan J, Gao GF, Wang Q
Cell Discov (2020) 6 pp. 68-68 [ DOI: doi:10.1038/s41421-020-00210-9 Pubmed: 33020722 ]
- Angiotensin-converting enzyme 2 (85 kDa, Protein from Felis catus)
- Cryo-em structure of cat ace2 and sars-cov-2 rbd (Complex from Felis catus)
- Zinc ion (65 Da, Ligand)
- Sars-cov-2 rbd (Complex)
- Cat ace2 (Complex)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)