SARS-CoV-2 BA.2.75 S Trimer in complex with ACE2(state1)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7yr2
Q-score: 0.354
Cao Y, Song W, Wang L, Liu P, Yue C, Jian F, Yu Y, Yisimayi A, Wang P, Wang Y, Zhu Q, Deng J, Fu W, Yu L, Zhang N, Wang J, Xiao T, An R, Wang J, Liu L, Yang S, Niu X, Gu Q, Shao F, Hao X, Meng B, Gupta RK, Jin R, Wang Y, Xie XS, Wang X
Cell Host Microbe (2022) 30 pp. 1527- [ Pubmed: 36270286 DOI: doi:10.1016/j.chom.2022.09.018 ]
- Water (18 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (69 kDa, Protein from Homo sapiens)
- Ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ba.2.75 s trimer (Complex)
- Zinc ion (65 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Ba.2.75 s trimer in complex with ace2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 BA.2.75 S Trimer in complex with ACE2(state2)
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 7yr3
Q-score: 0.314
Cao Y, Song W, Wang L, Liu P, Yue C, Jian F, Yu Y, Yisimayi A, Wang P, Wang Y, Zhu Q, Deng J, Fu W, Yu L, Zhang N, Wang J, Xiao T, An R, Wang J, Liu L, Yang S, Niu X, Gu Q, Shao F, Hao X, Meng B, Gupta RK, Jin R, Wang Y, Xie XS, Wang X
Cell Host Microbe (2022) 30 pp. 1527- [ Pubmed: 36270286 DOI: doi:10.1016/j.chom.2022.09.018 ]
- Ba.2.75 spike trimer in complex with ace2 (state2) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Water (18 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (69 kDa, Protein from Homo sapiens)
- Ace2 (Complex)
- Zinc ion (65 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Ba.2.75 spike trimer (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Al-bound structure of the AtALMT1 mutant M60A
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7voj
Q-score: 0.504
Wang J, Yu X, Ding ZJ, Zhang X, Luo Y, Xu X, Xie Y, Li X, Yuan T, Zheng SJ, Yang W, Guo J
Cell Res (2022) 32 pp. 89-98 [ Pubmed: 34799726 DOI: doi:10.1038/s41422-021-00587-6 ]
- Acetic acid (60 Da, Ligand)
- Aluminum-activated malate transporter 1 (56 kDa, Protein from Arabidopsis thaliana)
- Al-bound protein sample of the atalmt1 mutant m60a (120 MDa, Complex from Arabidopsis thaliana)
- Aluminum ion (26 Da, Ligand)
The structure of human ABCG5/ABCG8 purified from yeast
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7r89
Q-score: 0.595
Sun Y, Wang J, Long T, Qi X, Donnelly L, Elghobashi-Meinhardt N, Esparza L, Cohen JC, Xie XS, Hobbs HH, Li X
PNAS (2021) 118 [ Pubmed: 34404721 DOI: doi:10.1073/pnas.2110483118 ]
- Atp-binding cassette sub-family g member 8 (80 kDa, Protein from Homo sapiens)
- Atp-binding cassette sub-family g member 5 (74 kDa, Protein from Homo sapiens)
- 2c7 fab heavy chain (26 kDa, Protein from Mus musculus)
- 2c7 fab light chain (25 kDa, Protein from Mus musculus)
- Abcg1 transporter (Complex from Homo sapiens)
- Ergosterol (396 Da, Ligand)
- Abcg1 transporter with ergosterol and fab 2c7 bound (150 kDa, Complex)
- Fab 2c7 (Complex from Mus musculus)
The structure of human ABCG5/ABCG8 purified from mammalian cells
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7r8a
Q-score: 0.552
Sun Y, Wang J, Long T, Qi X, Donnelly L, Elghobashi-Meinhardt N, Esparza L, Cohen JC, Xie XS, Hobbs HH, Li X
PNAS (2021) 118 [ Pubmed: 34404721 DOI: doi:10.1073/pnas.2110483118 ]
- Atp-binding cassette sub-family g member 8 (80 kDa, Protein from Homo sapiens)
- Atp-binding cassette sub-family g member 5 (74 kDa, Protein from Homo sapiens)
- Abcg1 transporter with cholesterol and fab 2c7 bound (150 kDa, Complex)
- 2c7 fab heavy chain (26 kDa, Protein from Mus musculus)
- 2c7 fab light chain (25 kDa, Protein from Mus musculus)
- Abcg1 transporter (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Fab 2c7 (Complex from Mus musculus)
The structure of human ABCG5/ABCG8 supplemented with cholesterol
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7r8b
Q-score: 0.533
Sun Y, Wang J, Long T, Qi X, Donnelly L, Elghobashi-Meinhardt N, Esparza L, Cohen JC, Xie XS, Hobbs HH, Li X
PNAS (2021) 118 [ Pubmed: 34404721 DOI: doi:10.1073/pnas.2110483118 ]
- Atp-binding cassette sub-family g member 8 (80 kDa, Protein from Homo sapiens)
- Atp-binding cassette sub-family g member 5 (74 kDa, Protein from Homo sapiens)
- Abcg1 transporter with cholesterol and fab 2c7 bound (150 kDa, Complex)
- 2c7 fab heavy chain (26 kDa, Protein from Mus musculus)
- 2c7 fab light chain (25 kDa, Protein from Mus musculus)
- Abcg1 transporter with cholesterol bound (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Fab 2c7 (Complex from Mus musculus)
The structure of human ABCG1 E242Q with cholesterol
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7r8d
Q-score: 0.534
Sun Y, Wang J, Long T, Qi X, Donnelly L, Elghobashi-Meinhardt N, Esparza L, Cohen JC, Xie XS, Hobbs HH, Li X
PNAS (2021) 118 [ Pubmed: 34404721 DOI: doi:10.1073/pnas.2110483118 ]
- Isoform 4 of atp-binding cassette sub-family g member 1 (74 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Abcg1 transporter with cholesterol bound (150 kDa, Complex from Homo sapiens)
The structure of human ABCG1 E242Q complexed with ATP
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7r8e
Q-score: 0.451
Sun Y, Wang J, Long T, Qi X, Donnelly L, Elghobashi-Meinhardt N, Esparza L, Cohen JC, Xie XS, Hobbs HH, Li X
PNAS (2021) 118 [ Pubmed: 34404721 DOI: doi:10.1073/pnas.2110483118 ]
- Isoform 4 of atp-binding cassette sub-family g member 1 (74 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Abcg1 transporter with cholesterol and atp bound (150 kDa, Complex from Homo sapiens)
Cryo-EM structure of bafilomycin A1-bound intact V-ATPase from bovine brain
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 7khr
Q-score: 0.493
Wang R, Wang J, Hassan A, Lee CH, Xie XS, Li X
Nat Commun (2021) 12 pp. 1782-1782 [ Pubmed: 33741963 DOI: doi:10.1038/s41467-021-22111-5 ]
- Renin receptor (39 kDa, Protein from Bos taurus)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- V-type proton atpase catalytic subunit a (68 kDa, Protein from Bos taurus)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type proton atpase subunit d 1 (40 kDa, Protein from Bos taurus)
- Ribonuclease kappa (11 kDa, Protein from Bos taurus)
- Cryo-em structure of bafilomycin a1-bound intact v-atpase from bovine brain (Complex from Bos taurus)
- V-type proton atpase 21 kda proteolipid subunit (21 kDa, Protein from Bos taurus)
- V-type proton atpase subunit s1 (51 kDa, Protein from Bos taurus)
- Magnesium ion (24 Da, Ligand)
- V-type proton atpase subunit c 1 (44 kDa, Protein from Bos taurus)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Bos taurus)
- (5r)-2,4-dideoxy-1-c-{(2s,3r,4s)-3-hydroxy-4-[(2r,3s,4e,6e,9r,10s,11r,12e,14z)-10-hydroxy-3,15-dimethoxy-7,9,11,13-tetramethyl-16-oxo-1-oxacyclohexadeca-4,6,12,14-tetraen-2-yl]pentan-2-yl}-4-methyl-5-propan-2-yl-alpha-d-threo-pentopyranose (622 Da, Ligand)
- V-type proton atpase subunit a (96 kDa, Protein from Bos taurus)
- V-type proton atpase subunit h (54 kDa, Protein from Bos taurus)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Bos taurus)
- V-type proton atpase subunit f (13 kDa, Protein from Bos taurus)
- V-type proton atpase subunit e 2 (9 kDa, Protein from Bos taurus)
- Oleic acid (282 Da, Ligand)
- V-type proton atpase subunit g (13 kDa, Protein from Bos taurus)
- Methyl (3r,6z,10e,14e)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate (534 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Bos taurus)
- V-type proton atpase subunit d (28 kDa, Protein from Bos taurus)