Complex of FMDV O/18074 and inter-serotype broadly neutralizing antibodies pOA-2
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8y0q
Q-score: 0.621
Li F, Wu S, Lv L, Huang S, Zhang Z, Zerang Z, Li P, Cao Y, Bao H, Sun P, Bai X, He Y, Fu Y, Yuan H, Ma X, Zhao Z, Zhang J, Wang J, Wang T, Li D, Zhang Q, He J, Liu Z, Lu Z, Lei D, Li K
PLoS Pathog (2024) 20 pp. e1012623-e1012623 [ DOI: doi:10.1371/journal.ppat.1012623 Pubmed: 39405339 ]
- Inter-serotype broadly neutralizing antibodies poa-2 (Complex from Sus scrofa)
- Complex of fmdv o/18074 and inter-serotype broadly neutralizing antibodies poa-2 (Complex)
- Vp3 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus O)
- Vp1 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus O)
- Vp4 of capsid protein (8 kDa, Protein from Foot-and-mouth disease virus O)
- Poa2 vl (11 kDa, Protein from Sus scrofa)
- Vp2 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus O)
- Fmdv o/18074 (Complex from Foot-and-mouth disease virus O)
- Poa2 vh (13 kDa, Protein from Sus scrofa)
Complex of FMDV A/WH/CHA/09 and inter-serotype broadly neutralizing antibodies pOA-2
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8y0r
Q-score: 0.578
Li F, Wu S, Lv L, Huang S, Zhang Z, Zerang Z, Li P, Cao Y, Bao H, Sun P, Bai X, He Y, Fu Y, Yuan H, Ma X, Zhao Z, Zhang J, Wang J, Wang T, Li D, Zhang Q, He J, Liu Z, Lu Z, Lei D, Li K
PLoS Pathog (2024) 20 pp. e1012623-e1012623 [ DOI: doi:10.1371/journal.ppat.1012623 Pubmed: 39405339 ]
- Inter-serotype broadly neutralizing antibodies poa-2 (Complex from Sus scrofa)
- Complex of fmdv a/wh/cha/09 and inter-serotype broadly neutralizing antibodies poa-2 (Complex)
- Vp2 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus A)
- Vp3 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus A)
- Fmdv a/wh/cha/09 (Complex from Foot-and-mouth disease virus A)
- Vp4 of capsid protein (8 kDa, Protein from Foot-and-mouth disease virus A)
- Vp1 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus A)
- Poa2 vl (11 kDa, Protein from Sus scrofa)
- Poa2 vh (13 kDa, Protein from Sus scrofa)
Structure of R2 with 3'UTR and DNA in binding state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8ibw
Q-score: 0.385
Deng P, Tan SQ, Yang QY, Fu L, Wu Y, Zhu HZ, Sun L, Bao Z, Lin Y, Zhang QC, Wang H, Wang J, Liu JG
Cell (2023) 186 pp. 2865-2879.e20 [ DOI: doi:10.1016/j.cell.2023.05.032 Pubmed: 37301196 ]
- Reverse transcriptase-like protein (123 kDa, Protein from Bombyx mori)
- R2 complex (177 kDa, Complex from Bombyx mori)
- Dna (60-mer) (18 kDa, DNA from Bombyx mori)
- Zinc ion (65 Da, Ligand)
- 3'utr (16 kDa, RNA from Bombyx mori)
- Dna (60-mer) (18 kDa, DNA from Bombyx mori)
Structure of R2 with 3'UTR and DNA in unwinding state
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 8ibx
Q-score: 0.385
Deng P, Tan SQ, Yang QY, Fu L, Wu Y, Zhu HZ, Sun L, Bao Z, Lin Y, Zhang QC, Wang H, Wang J, Liu JG
Cell (2023) 186 pp. 2865-2879.e20 [ DOI: doi:10.1016/j.cell.2023.05.032 Pubmed: 37301196 ]
- Reverse transcriptase-like protein (123 kDa, Protein from Bombyx mori)
- R2 complex (177 kDa, Complex from Bombyx mori)
- Dna (60-mer) (18 kDa, DNA from Bombyx mori)
- Zinc ion (65 Da, Ligand)
- 3'utr (16 kDa, RNA from Bombyx mori)
- Dna (60-mer) (18 kDa, DNA from Bombyx mori)
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8iby
Q-score: 0.342
Deng P, Tan SQ, Yang QY, Fu L, Wu Y, Zhu HZ, Sun L, Bao Z, Lin Y, Zhang QC, Wang H, Wang J, Liu JG
Cell (2023) 186 pp. 2865-2879.e20 [ DOI: doi:10.1016/j.cell.2023.05.032 Pubmed: 37301196 ]
- Reverse transcriptase-like protein (123 kDa, Protein from Bombyx mori)
- 5'orf rna (72 kDa, RNA from Bombyx mori)
- R2 complex (177 kDa, Complex from Bombyx mori)
- Zinc ion (65 Da, Ligand)
Structure of R2 with 5'ORF and 3'UTR
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8ibz
Q-score: 0.435
Deng P, Tan SQ, Yang QY, Fu L, Wu Y, Zhu HZ, Sun L, Bao Z, Lin Y, Zhang QC, Wang H, Wang J, Liu JG
Cell (2023) 186 pp. 2865-2879.e20 [ DOI: doi:10.1016/j.cell.2023.05.032 Pubmed: 37301196 ]
- Reverse transcriptase-like protein (123 kDa, Protein from Bombyx mori)
- Zinc ion (65 Da, Ligand)
- R2 complex (177 kDa, Complex from Bombyx mori)
- 5orf-linker-3utr (65 kDa, RNA from Bombyx mori)
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 8h0x
Q-score: 0.614
Zhang X, Li Z, Zhang Y, Liu Y, Wang J, Liu B, Chen Q, Wang Q, Fu L, Wang P, Zhong X, Jin L, Yan Q, Chen L, He J, Zhao J, Xiong X
Life Sci Alliance (2023) 6 [ Pubmed: 37402591 DOI: doi:10.26508/lsa.202201796 ]
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Sars-cov-1 spike protein (410 kDa, Complex from Severe acute respiratory syndrome coronavirus)
- Linoleic acid (280 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Biliverdine ix alpha (582 Da, Ligand)
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 8h0y
Q-score: 0.59
Zhang X, Li Z, Zhang Y, Liu Y, Wang J, Liu B, Chen Q, Wang Q, Fu L, Wang P, Zhong X, Jin L, Yan Q, Chen L, He J, Zhao J, Xiong X
Life Sci Alliance (2023) 6 [ Pubmed: 37402591 DOI: doi:10.26508/lsa.202201796 ]
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Sars-cov-1 spike protein (410 kDa, Complex from Severe acute respiratory syndrome coronavirus)
- Linoleic acid (280 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Biliverdine ix alpha (582 Da, Ligand)
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8h0z
Q-score: 0.56
Zhang X, Li Z, Zhang Y, Liu Y, Wang J, Liu B, Chen Q, Wang Q, Fu L, Wang P, Zhong X, Jin L, Yan Q, Chen L, He J, Zhao J, Xiong X
Life Sci Alliance (2023) 6 [ Pubmed: 37402591 DOI: doi:10.26508/lsa.202201796 ]
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Sars-cov-1 spike protein (410 kDa, Complex from Severe acute respiratory syndrome coronavirus)
- Linoleic acid (280 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Biliverdine ix alpha (582 Da, Ligand)
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 8h11
Q-score: 0.59
Zhang X, Li Z, Zhang Y, Liu Y, Wang J, Liu B, Chen Q, Wang Q, Fu L, Wang P, Zhong X, Jin L, Yan Q, Chen L, He J, Zhao J, Xiong X
Life Sci Alliance (2023) 6 [ Pubmed: 37402591 DOI: doi:10.26508/lsa.202201796 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-1 spike protein (410 kDa, Complex from Severe acute respiratory syndrome coronavirus)
- Spike glycoprotein (136 kDa, Protein from Severe acute respiratory syndrome coronavirus)