Electron Microscopy Data Bank

EMD-38397

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Intact MAP of defence-associated sirtuin 2 (DSR2) H171A protein in complex with DSAD1 (DSR anti-defence 1)

Release date: Oct. 23, 2024
Resolution: 6.99 Å
EM Method: Single-particle

Zhang H, Li Y, Li L, Chen L, Zhu C, Sun L, Dong P, Jing D, Yang J, Fu L, Xiao F, Xia N, Li S, Zheng Q, Wu Y

Sci Adv (2024) 10 pp. eadn5691-eadn5691 [ DOI: doi:10.1126/sciadv.adn5691 Pubmed: 39083599 ]

Sample:

Dsr2 h171a in complex with dsad1 (Complex from Bacillus sp. DSM 5850)

EMD-35112

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Cryo-EM map of SepF

Release date: Jan. 17, 2024
Resolution: 7.32 Å
EM Method: Single-particle

Liu W, Zhang C, Zhang H, Ma S, Deng J, Wang D, Chang Z, Yang J

PNAS (2024) 121 pp. e2316922121-e2316922121 [ DOI: doi:10.1073/pnas.2316922121 Pubmed: 38381790 ]

Sample:

Sepf from bacillus subtilis (Complex from Bacillus subtilis)

EMD-32252

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Cryo-EM structure of human cohesin-CTCF-DNA complex

Release date: May 31, 2023
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 7w1m
Q-score: 0.163

Zhang H, Shi Z, Banigan EJ, Kim Y, Yu H, Bai XC, Finkelstein IJ

Mol Cell (2023) 83 pp. 2856-2871.e8 [ Pubmed: 37536339 DOI: doi:10.1016/j.molcel.2023.07.006 ]

Sample:

Adenosine-5'-diphosphate (427 Da, Ligand)
Dna (Complex)
Dna (118-mer) (36 kDa, DNA from Homo sapiens)
Zinc ion (65 Da, Ligand)
Cohesin subunit sa-1 (144 kDa, Protein from Homo sapiens)
Structural maintenance of chromosomes protein 1a (143 kDa, Protein from Homo sapiens)
Human cohesin-nipbl-ctcf-dna complex (Complex from Homo sapiens)
Beryllium trifluoride ion (66 Da, Ligand)
Structural maintenance of chromosomes protein 3 (141 kDa, Protein from Homo sapiens)
Nipped-b-like protein (167 kDa, Protein from Homo sapiens)
Double-strand-break repair protein rad21 homolog (71 kDa, Protein from Homo sapiens)
Human cohesin-nipbl-ctcf (Complex)
Dna (118-mer) (36 kDa, DNA from Homo sapiens)
Transcriptional repressor ctcf (82 kDa, Protein from Homo sapiens)

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EMD-35136

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Follicle stimulating hormone receptor

Release date: March 22, 2023
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 8i2h
Q-score: 0.022

Duan J, Xu P, Zhang H, Luan X, Yang J, He X, Mao C, Shen DD, Ji Y, Cheng X, Jiang H, Jiang Y, Zhang S, Zhang Y, Xu HE

Nat Commun (2023) 14 pp. 519-519 [ Pubmed: 36720854 DOI: doi:10.1038/s41467-023-36170-3 ]

Sample:

Follicle-stimulating hormone receptor (76 kDa, Protein from Homo sapiens)
Follicle stimulating hormone receptor (Complex from Homo sapiens)

EMD-32053

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Macroglobulin family protein

Release date: Oct. 19, 2022
Resolution: 6.1 Å
EM Method: Single-particle

Huang X, Wang Y, Yu C, Zhang H, Ru Q, Li X, Song K, Zhou M, Zhu P

Sci China Life Sci (2022) 65 pp. 2491-2504 [ DOI: doi:10.1007/s11427-022-2139-2 Pubmed: 35781771 ]

Sample:

Macroglobulin family protein (Tissue from Homo sapiens)

EMD-32054

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Macroglobulin family protein

Release date: Oct. 19, 2022
Resolution: 6.9 Å
EM Method: Single-particle

Huang X, Wang Y, Yu C, Zhang H, Ru Q, Li X, Song K, Zhou M, Zhu P

Sci China Life Sci (2022) 65 pp. 2491-2504 [ DOI: doi:10.1007/s11427-022-2139-2 Pubmed: 35781771 ]

Sample:

Macroglobulin family protein (Tissue from Homo sapiens)

EMD-32055

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Macroglobulin family protein

Release date: Oct. 19, 2022
Resolution: 6.5 Å
EM Method: Single-particle

Huang X, Wang Y, Yu C, Zhang H, Ru Q, Li X, Song K, Zhou M, Zhu P

Sci China Life Sci (2022) 65 pp. 2491-2504 [ DOI: doi:10.1007/s11427-022-2139-2 Pubmed: 35781771 ]

Sample:

Macroglobulin family protein (Tissue from Homo sapiens)

EMD-20910

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Cryo-EM structure of VcCascade-TniQ supercomplex

Release date: Jan. 29, 2020
Resolution: 6.3 Å
EM Method: Single-particle

Li Z, Zhang H, Xiao R, Chang L

Cell Res (2020) 30 pp. 179-181 [ Pubmed: 31900425 DOI: doi:10.1038/s41422-019-0268-y ]

Sample:

Cas6 (Protein)
Protein complex 5 (Complex from Lachnospiraceae bacterium ND2006)
Cas8 (Protein)
Cas7 (Protein)

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EMD-20785

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CYP102A1_A82F_closed

Release date: Jan. 15, 2020
Resolution: 7.6 Å
EM Method: Single-particle

Su M, Chakraborty S, Osawa Y, Zhang H

J Biol Chem (2020) 295 pp. 1637-1645 [ DOI: doi:10.1074/jbc.RA119.011305 Pubmed: 31901079 ]

Sample:

Full-length cytochrome p450 cyp102a1 enzyme (238 kDa, Complex from Escherichia coli)
Cytochrome p450 cyp102a1 enzyme (Protein from Escherichia coli)

EMD-21099

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CYP102A1-A82F-D12-open-state

Release date: Jan. 15, 2020
Resolution: 7.9 Å
EM Method: Single-particle

Su M, Chakraborty S, Osawa Y, Zhang H

J Biol Chem (2020) 295 pp. 1637-1645 [ DOI: doi:10.1074/jbc.RA119.011305 Pubmed: 31901079 ]

Sample:

Deletion variant of cytochrome p450 cyp102a1 enzyme (238 kDa, Complex from Escherichia coli)
Cytochrome p450 102a1 (bm3) (Protein)

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