Cryo-EM structure of the ABC transporter PCAT1 bound with MgADP and Substrate
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 8vp3
Q-score: 0.534
Zhang R, Jagessar KL, Brownd M, Polasa A, Stein RA, Moradi M, Karakas E, Mchaourab HS
Nat Commun (2024) 15 pp. 9055-9055 [ Pubmed: 39428489 DOI: doi:10.1038/s41467-024-53420-0 ]
- Magnesium ion (24 Da, Ligand)
- 3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxypropyl hexadecanoate (480 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Bacteriocin-type signal sequence-containing protein (12 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
- Abc-type bacteriocin transporter (83 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
- Pcat1 (1 MDa, Complex from Acetivibrio thermocellus ATCC 27405)
Cryo-EM structure of the ABC transporter PCAT1 bound with ADP and Substrate
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8vp5
Q-score: 0.561
Zhang R, Jagessar KL, Brownd M, Polasa A, Stein RA, Moradi M, Karakas E, Mchaourab HS
Nat Commun (2024) 15 pp. 9055-9055 [ Pubmed: 39428489 DOI: doi:10.1038/s41467-024-53420-0 ]
- Pcat1 bound with substrate (1 MDa, Complex from Acetivibrio thermocellus ATCC 27405)
- 3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxypropyl hexadecanoate (480 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Bacteriocin-type signal sequence-containing protein (12 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
- Abc-type bacteriocin transporter (83 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
Cryo-EM structure of the ABC transporter PCAT1 bound with Mg_class_2
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8vp6
Q-score: 0.525
Zhang R, Jagessar KL, Brownd M, Polasa A, Stein RA, Moradi M, Karakas E, Mchaourab HS
Nat Commun (2024) 15 pp. 9055-9055 [ Pubmed: 39428489 DOI: doi:10.1038/s41467-024-53420-0 ]
- Abc-type bacteriocin transporter (83 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
- Pcat1 (1 MDa, Complex from Acetivibrio thermocellus ATCC 27405)
Cryo-EM structure of the ABC transporter PCAT1 bound with ATP and Substrate
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 8vp8
Q-score: 0.469
Zhang R, Jagessar KL, Brownd M, Polasa A, Stein RA, Moradi M, Karakas E, Mchaourab HS
Nat Commun (2024) 15 pp. 9055-9055 [ Pubmed: 39428489 DOI: doi:10.1038/s41467-024-53420-0 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Abc-type bacteriocin transporter (83 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
- Pcat1 (1 MDa, Complex from Acetivibrio thermocellus ATCC 27405)
Cryo-EM structure of the cysteine-free ABC transporter PCAT1 bound with ADP and Substrate
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8vp9
Q-score: 0.475
Zhang R, Jagessar KL, Brownd M, Polasa A, Stein RA, Moradi M, Karakas E, Mchaourab HS
Nat Commun (2024) 15 pp. 9055-9055 [ Pubmed: 39428489 DOI: doi:10.1038/s41467-024-53420-0 ]
- 3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxypropyl hexadecanoate (480 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Bacteriocin-type signal sequence-containing protein (12 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
- Pcat1 (1 MDa, Complex from Acetivibrio thermocellus ATCC 27405)
- Abc-type bacteriocin transporter (83 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
Cryo-EM structure of the ABC transporter PCAT1 bound with ADP
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 8vpa
Q-score: 0.546
Zhang R, Jagessar KL, Brownd M, Polasa A, Stein RA, Moradi M, Karakas E, Mchaourab HS
Nat Commun (2024) 15 pp. 9055-9055 [ Pubmed: 39428489 DOI: doi:10.1038/s41467-024-53420-0 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Abc-type bacteriocin transporter (83 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
- Pcat1 (1 MDa, Complex from Acetivibrio thermocellus ATCC 27405)
Cryo-EM structure of the ABC transporter PCAT1 bound with MgADP_Class_2
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8vpb
Q-score: 0.436
Zhang R, Jagessar KL, Brownd M, Polasa A, Stein RA, Moradi M, Karakas E, Mchaourab HS
Nat Commun (2024) 15 pp. 9055-9055 [ Pubmed: 39428489 DOI: doi:10.1038/s41467-024-53420-0 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Abc-type bacteriocin transporter (83 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
- Pcat1 (1 MDa, Complex from Acetivibrio thermocellus ATCC 27405)
Cryo-EM structure of the ABC transporter PCAT1 bound with MgADP class1
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9azl
Q-score: 0.532
Zhang R, Jagessar KL, Brownd M, Polasa A, Stein RA, Moradi M, Karakas E, Mchaourab HS
Nat Commun (2024) 15 pp. 9055-9055 [ Pubmed: 39428489 DOI: doi:10.1038/s41467-024-53420-0 ]
- Magnesium ion (24 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Abc-type bacteriocin transporter (83 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
- Pcat1 (1 MDa, Complex from Acetivibrio thermocellus ATCC 27405)
Cryo-EM structure of the ABC transporter PCAT1 bound with Mg_class_1
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 9baa
Q-score: 0.453
Zhang R, Jagessar KL, Brownd M, Polasa A, Stein RA, Moradi M, Karakas E, Mchaourab HS
Nat Commun (2024) 15 pp. 9055-9055 [ Pubmed: 39428489 DOI: doi:10.1038/s41467-024-53420-0 ]
- Abc-type bacteriocin transporter (83 kDa, Protein from Acetivibrio thermocellus ATCC 27405)
- Pcat1 (1 MDa, Complex from Acetivibrio thermocellus ATCC 27405)
Cryo-EM structure of bovine Fallopian tube cilia doublet microtubule (48-nm periodicity)
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 9cpb
Q-score: 0.392
Leung MR, Sun C, Zeng J, Anderson JR, Niu Q, Huang W, Noteborn WEM, Brown A, Zeev-Ben-Mordehai T, Zhang R
Nature (2025) 637 pp. 1170-1177 [ DOI: doi:10.1038/s41586-024-08337-5 Pubmed: 39743588 ]
- Sperm acrosome associated 9 (19 kDa, Protein from Bos taurus)
- Pierce2 (13 kDa, Protein from Bos taurus)
- Tektin-2 (49 kDa, Protein from Bos taurus)
- Cilia and flagella associated protein 161 (36 kDa, Protein from Bos taurus)
- Cfap95 (26 kDa, Protein from Bos taurus)
- Coiled-coil domain containing 173 (65 kDa, Protein from Bos taurus)
- Sperm associated antigen 8 (51 kDa, Protein from Bos taurus)
- Cilia and flagella associated protein 52 (68 kDa, Protein from Bos taurus)
- Cfap141 (12 kDa, Protein from Bos taurus)
- Cilia and flagella associated protein 90 (16 kDa, Protein from Bos taurus)
- Ef-hand calcium-binding domain-containing protein 1 (24 kDa, Protein from Bos taurus)
- Nucleoside diphosphate kinase 7 (42 kDa, Protein from Bos taurus)
- Ef-hand calcium binding domain 6 (162 kDa, Protein from Bos taurus)
- Bovine fallopian tube cilia (Cellular component from Bos taurus)
- Tektin-3 (56 kDa, Protein from Bos taurus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Meiosis-specific nuclear structural protein 1 (60 kDa, Protein from Bos taurus)
- Magnesium ion (24 Da, Ligand)
- Tubulin alpha-1d chain (50 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from Bos taurus)
- Cilia and flagella associated protein 77 (32 kDa, Protein from Bos taurus)
- Pacrg protein (29 kDa, Protein from Bos taurus)
- Ttc25 protein (78 kDa, Protein from Bos taurus)
- Protein flattop (21 kDa, Protein from Bos taurus)
- Enkurin, trpc channel interacting protein (30 kDa, Protein from Bos taurus)
- Ciliary microtubule associated protein 1c (30 kDa, Protein from Bos taurus)
- Tektin-1 (48 kDa, Protein from Bos taurus)
- Cilia and flagella associated protein 45 (65 kDa, Protein from Bos taurus)
- Ciliary microtubule associated protein 1a (27 kDa, Protein from Bos taurus)
- Methyl-cpg binding domain protein 1 (62 kDa, Protein from Bos taurus)
- Coiled-coil domain containing 114 (77 kDa, Protein from Bos taurus)
- Outer dynein arm-docking complex subunit 3 (72 kDa, Protein from Bos taurus)
- Cilia-and flagella-associated protein 96 (34 kDa, Protein from Bos taurus)
- Pierce1 (15 kDa, Protein from Bos taurus)
- Uncharacterized protein c1orf158 homolog (23 kDa, Protein from Bos taurus)
- Efhc2 (85 kDa, Protein from Bos taurus)
- Cfap276 (19 kDa, Protein from Bos taurus)
- Tubulin beta-4b chain (49 kDa, Protein from Bos taurus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tektin-4 (52 kDa, Protein from Bos taurus)
- Armadillo repeat containing 4 (116 kDa, Protein from Bos taurus)
- Ef-hand domain containing 1 (74 kDa, Protein from Bos taurus)
- Ef-hand domain family member b (97 kDa, Protein from Bos taurus)
- Protein fam166b (30 kDa, Protein from Bos taurus)
- Rib43a-like with coiled-coils protein 2 (44 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 144 (16 kDa, Protein from Bos taurus)