Yan L, Yang Y, Li M, Zhang Y, Zheng L, Ge J, Huang YC, Liu Z, Wang T, Gao S, Zhang R, Huang YY, Guddat LW, Gao Y, Rao Z, Lou Z
Cell (2021) 184 pp. 3474-3485.e11 [ Pubmed: 34143953 DOI: doi:10.1016/j.cell.2021.05.033 ]
- Template (8 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Proofreading exoribonuclease (59 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Helicase (66 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Magnesium ion (24 Da, Ligand)
- Primer rna, template rna (Complex)
- Non-structural protein 10 (14 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Primer (8 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Rna-directed rna polymerase (106 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 7 (9 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 9 (12 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nsp 7, 8, 9, 10, 12, 13, 14 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Mcap(0)-rtc (Complex from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 8 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7egq
Q-score: 0.384
Yan L, Yang Y, Li M, Zhang Y, Zheng L, Ge J, Huang YC, Liu Z, Wang T, Gao S, Zhang R, Huang YY, Guddat LW, Gao Y, Rao Z, Lou Z
Cell (2021) 184 pp. 3474-3485.e11 [ Pubmed: 34143953 DOI: doi:10.1016/j.cell.2021.05.033 ]
- Non-structural protein 9 (12 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Proofreading exoribonuclease (59 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Cap(0)-rtc (Complex from Severe acute respiratory syndrome coronavirus 2)
- Magnesium ion (24 Da, Ligand)
- Primer rna, template rna (Complex)
- Primer rna (8 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Template rna (10 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Rna-directed rna polymerase (106 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 10 (14 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Non-structural protein 7 (9 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Helicase (66 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nsp 7, 8, 9, 10, 12, 13, 14 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 8 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Anthrax Toxin Receptor 1-bound spent particles of Seneca Valley Virus in acidic conditions
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 6adl
Q-score: -0.025
Cao L, Zhang R, Liu T, Sun Z, Hu M, Sun Y, Cheng L, Guo Y, Fu S, Hu J, Li X, Yu C, Wang H, Chen H, Li X, Fry EE, Stuart DI, Qian P, Lou Z, Rao Z
PNAS (2018) 115 pp. 13087-13092 [ Pubmed: 30514821 DOI: doi:10.1073/pnas.1814309115 ]
- Anthrax toxin receptor 1 (21 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Seneca valley virus (Virus from Seneca valley virus)
- Vp2 (27 kDa, Protein from Senecavirus A)
- Vp3 (26 kDa, Protein from Senecavirus A)
- Vp1 (25 kDa, Protein from Senecavirus A)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6jcq
Q-score: 0.414
Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z
Nat Commun (2019) 10 pp. 3760-3760 [ Pubmed: 31434885 DOI: doi:10.1038/s41467-019-11668-x ]
- Capsid protein (Complex from Adeno-associated virus - 1)
- Pkd2 (Cellular component from Homo sapiens)
- Dyslexia-associated protein kiaa0319-like protein (9 kDa, Protein from Homo sapiens)
- Capsid protein (58 kDa, Protein from Adeno-associated virus - 1)
- Adeno-associated virus - 1 (Complex)
AAV1 in neutral condition at 3.07 Ang
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 6jcr
Q-score: 0.452
Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z
Nat Commun (2019) 10 pp. 3760-3760 [ Pubmed: 31434885 DOI: doi:10.1038/s41467-019-11668-x ]
- Adeno-associated virus - 1 (Virus from Adeno-associated virus - 1)
- Capsid protein (58 kDa, Protein from Adeno-associated virus - 1)
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 6jcs
Q-score: 0.433
Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z
Nat Commun (2019) 10 pp. 3760-3760 [ Pubmed: 31434885 DOI: doi:10.1038/s41467-019-11668-x ]
- Capsid protein vp1 (Complex from Adeno-associated virus - 5)
- Adeno-associated virus - 5 (Complex)
- Dyslexia-associated protein kiaa0319-like protein (10 kDa, Protein from Homo sapiens)
- Pkd1 (Cellular component from Homo sapiens)
- Capsid protein (58 kDa, Protein from Adeno-associated virus - 5)
AAV5 in neutral condition at 3.18 Ang
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 6jct
Q-score: 0.446
Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z
Nat Commun (2019) 10 pp. 3760-3760 [ Pubmed: 31434885 DOI: doi:10.1038/s41467-019-11668-x ]
- Capsid protein (58 kDa, Protein from Adeno-associated virus - 5)
- Adeno-associated virus - 5 (Virus from Adeno-associated virus - 5)
Adeno-Associated Virus 2 at 2.8 ang
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6ih9
Q-score: 0.396
Adeno-Associated Virus 2 in complex with AAVR
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 6ihb
Q-score: 0.437
Zhang R, Cao L, Cui M, Sun Z, Hu M, Zhang R, Stuart W, Zhao X, Yang Z, Li X, Sun Y, Li S, Ding W, Lou Z, Rao Z
Nat Microbiol (2019) 4 pp. 675-682 [ Pubmed: 30742069 DOI: doi:10.1038/s41564-018-0356-7 ]
- Dyslexia-associated protein kiaa0319-like protein (10 kDa, Protein from Homo sapiens)
- Aav2 in complex with aavr (Complex)
- Aavr pkd2 (Complex from Homo sapiens)
- Adeno-associated virus 2 (Complex from Adeno-associated virus 2 (isolate Srivastava/1982))
- Capsid protein vp1 (82 kDa, Protein from Adeno-associated virus 2 (isolate Srivastava/1982))
Anthrax Toxin Receptor 1-bound full particles of Seneca Valley Virus in acidic conditions
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 6adm
Q-score: -0.027
Cao L, Zhang R, Liu T, Sun Z, Hu M, Sun Y, Cheng L, Guo Y, Fu S, Hu J, Li X, Yu C, Wang H, Chen H, Li X, Fry EE, Stuart DI, Qian P, Lou Z, Rao Z
PNAS (2018) 115 pp. 13087-13092 [ Pubmed: 30514821 DOI: doi:10.1073/pnas.1814309115 ]
- Anthrax toxin receptor 1 (21 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Seneca valley virus (Virus from Seneca valley virus)
- Vp3 (26 kDa, Protein from Seneca valley virus)
- Vp4 (5 kDa, Protein from Seneca valley virus)
- Vp1 (28 kDa, Protein from Seneca valley virus)
- Vp2 (29 kDa, Protein from Seneca valley virus)