Cryo-EM model of the marine siphophage vB_DshS-R4C baseplate-tail complex
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8gtc
Q-score: 0.275
Huang Y, Sun H, Wei S, Cai L, Liu L, Jiang Y, Xin J, Chen Z, Que Y, Kong Z, Li T, Yu H, Zhang J, Gu Y, Zheng Q, Li S, Zhang R, Xia N
Nat Commun (2023) 14 pp. 3609-3609 [ DOI: doi:10.1038/s41467-023-39220-y Pubmed: 37330604 ]
- Dinoroseobacter phage vb_dshs-r4c (Virus from Dinoroseobacter phage vB DshS-R4C)
- Megatron protein (154 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
- Distal tail protein (23 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
- Hub protein (31 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
- Ribonuclease iii (22 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
- Major tail protein (13 kDa, Protein from Dinoroseobacter phage vB DshS-R4C)
Cryo-EM model of the marine siphophage vB_DshS-R4C portal-adaptor complex
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 8gtd
Q-score: 0.238
Cryo-EM structure of RecBCD with undocked RecBNuc and flexible RecD C-terminus
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7mr1
Q-score: 0.375
J Mol Biol (2021) 433 pp. 167147-167147 [ Pubmed: 34246654 DOI: doi:10.1016/j.jmb.2021.167147 ]
- Heterotrimeric complex of recbcd (Complex from Escherichia coli K12)
- Recbcd enzyme subunit recc (128 kDa, Protein from Escherichia coli K12)
- Recbcd enzyme subunit recd (66 kDa, Protein from Escherichia coli K12)
- Recbcd enzyme subunit recb (134 kDa, Protein from Escherichia coli K12)
Cryo-EM structure of RecBCD with undocked RecBNuc and flexible RecD
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7mr2
Q-score: 0.356
J Mol Biol (2021) 433 pp. 167147-167147 [ Pubmed: 34246654 DOI: doi:10.1016/j.jmb.2021.167147 ]
- Heterotrimeric complex of recbcd (Complex from Escherichia coli K12)
- Recbcd enzyme subunit recc (128 kDa, Protein from Escherichia coli (strain K12))
- Recbcd enzyme subunit recb (134 kDa, Protein from Escherichia coli (strain K12))
- Recbcd enzyme subunit recd (66 kDa, Protein from Escherichia coli (strain K12))
Cryo-EM structure of RecBCD-DNA complex with undocked RecBNuc and flexible RecD
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7mr4
Q-score: 0.334
J Mol Biol (2021) 433 pp. 167147-167147 [ Pubmed: 34246654 DOI: doi:10.1016/j.jmb.2021.167147 ]
- Recbcd enzyme subunit recb (134 kDa, Protein from Escherichia coli (strain K12))
- Recbcd heterotrimer in complex with 60bp blunt-ended dsdna (Complex from Escherichia coli K12)
- Dna (60-mer) (18 kDa, DNA from Synthetic construct)
- Dna (60-mer) (18 kDa, DNA from Synthetic construct)
- Recbcd enzyme subunit recc (128 kDa, Protein from Escherichia coli (strain K12))
- Recbcd enzyme subunit recd (66 kDa, Protein from Escherichia coli (strain K12))
CryoEM structure of influenza hemagglutinin A/Victoria/361/2011 in complex with cyno antibody 3B10
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 6wzt
Q-score: 0.315
Darricarrere N, Qiu Y, Kanekiyo M, Creanga A, Gillespie RA, Moin SM, Saleh J, Sancho J, Chou TH, Zhou Y, Zhang R, Dai S, Moody A, Saunders KO, Crank MC, Mascola JR, Graham BS, Wei CJ, Nabel GJ
Sci Transl Med (2021) 13 [ DOI: doi:10.1126/scitranslmed.abe5449 Pubmed: 33658355 ]
- Cyno antibody light chain (23 kDa, Protein from Macaca fascicularis)
- Cyno antibody (Complex)
- Hemagglutinin (Complex from Macaca fascicularis)
- Hemagglutinin (56 kDa, Protein from Influenza A virus)
- Cyno antibody heavy chain (24 kDa, Protein from Macaca fascicularis)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Influenza hemagglutinin a/victoria/361/2011 in complex with 3b10 fab (336 kDa, Complex from Influenza A virus)
CryoEM structure of influenza hemagglutinin A/Michigan/45/2015 in complex with cyno antibody 1C4
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6xgc
Q-score: 0.392
Darricarrere N, Qiu Y, Kanekiyo M, Creanga A, Gillespie RA, Moin SM, Saleh J, Sancho J, Chou TH, Zhou Y, Zhang R, Dai S, Moody A, Saunders KO, Crank MC, Mascola JR, Graham BS, Wei CJ, Nabel GJ
Sci Transl Med (2021) 13 [ DOI: doi:10.1126/scitranslmed.abe5449 Pubmed: 33658355 ]
- 1c4 fab heavy chain (25 kDa, Protein from Macaca fascicularis)
- Hemagglutinin ha2 chain (25 kDa, Protein from Influenza A virus (A/Michigan/45/2015(H1N1)))
- Hemagglutinin ha1 chain (36 kDa, Protein from Influenza A virus (A/Michigan/45/2015(H1N1)))
- 1c4 fab light chain (22 kDa, Protein from Macaca fascicularis)
- 1c4 fab (Complex from Macaca fascicularis)
- Hemagglutinin (Complex from Influenza A virus (A/Michigan/45/2015(H1N1)))
- A/michigan/45/2015(h1n1) hemagglutinin in complex with 1c4 fab (320 MDa, Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 4.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 6o2s
Q-score: 0.275
Eshun-Wilson L, Zhang R, Portran D, Nachury MV, Toso DB, Lohr T, Vendruscolo M, Bonomi M, Fraser JS, Nogales E
PNAS (2019) 116 pp. 10366-10371 [ Pubmed: 31072936 DOI: doi:10.1073/pnas.1900441116 ]
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Deacetylated microtubule (Tissue from Sus scrofa)
Resolution: 4.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 6o2t
Q-score: 0.252
Eshun-Wilson L, Zhang R, Portran D, Nachury MV, Toso DB, Lohr T, Vendruscolo M, Bonomi M, Fraser JS, Nogales E
PNAS (2019) 116 pp. 10366-10371 [ Pubmed: 31072936 DOI: doi:10.1073/pnas.1900441116 ]
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Acetylated microtubule (Tissue from Sus scrofa)
- Tubulin alpha-1b chain (50 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
Electron Cryo-Microscopy Of Chikungunya VLP
Resolution: 4.16 Å
EM Method: Single-particle
Fitted PDBs: 6nk5
Q-score: 0.304
Basore K, Kim AS, Nelson CA, Zhang R, Smith BK, Uranga C, Vang L, Cheng M, Gross ML, Smith J, Diamond MS, Fremont DH
Cell (2019) 177 pp. 1725- [ DOI: doi:10.1016/j.cell.2019.04.006 Pubmed: 31080061 ]
- E1 glycoprotein (47 kDa, Protein from Chikungunya virus (strain 37997))
- Chikungunya virus (Virus from Chikungunya virus)
- E2 glycoprotein (46 kDa, Protein from Chikungunya virus (strain 37997))
- Capsid protein (16 kDa, Protein from Chikungunya virus (strain 37997))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)