Cryo-EM structure of the trimeric HerA
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8yho
Q-score: 0.425
Cryo-EM structure of the trimeric HerA
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8yhx
Q-score: 0.392
Zhen X, Zhou B, Liu Z, Wang X, Zhao H, Wu S, Li Z, Liang J, Zhang W, Zhu Q, He J, Xiong X, Ouyang S
Nat Commun (2024) 15 pp. 9269-9269 [ DOI: doi:10.1038/s41467-024-53614-6 Pubmed: 39465277 ]
- Cryo-em structure of the trimeric hera (Complex from Staphylococcus aureus)
- Duf87 domain-containing protein (65 kDa, Protein from Staphylococcus aureus)
- Sir2 family protein (50 kDa, Protein from Staphylococcus aureus)
- Adenosine-5-diphosphoribose (559 Da, Ligand)
Cryo-EM structure of CXCR4 in complex with CXCL12
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8k3z
Q-score: 0.593
Liu Y, Liu A, Li X, Liao Q, Zhang W, Zhu L, Ye RD
Cell Rep (2024) 43 pp. 114578-114578 [ Pubmed: 39093700 DOI: doi:10.1016/j.celrep.2024.114578 ]
- Stromal cell-derived factor 1 (7 kDa, Protein from Homo sapiens)
- Cxcr4-cxcl12-gi-scfv16 complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- Scfv16 (26 kDa, Protein from Vicugna pacos)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- C-x-c chemokine receptor type 4 (33 kDa, Protein from Homo sapiens)
Cryo-EM structure of KEOPS complex from Arabidopsis thaliana
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8k20
Q-score: 0.278
Zheng X, Su C, Duan L, Jin M, Sun Y, Zhu L, Zhang W
Nucleic Acids Res (2024) 52 pp. 4523-4540 [ DOI: doi:10.1093/nar/gkae179 Pubmed: 38477398 ]
- At4g34412 (19 kDa, Protein from Arabidopsis thaliana)
- Keops complex from arabidopsis thaliana (Complex from Arabidopsis thaliana)
- Probable trna n6-adenosine threonylcarbamoyltransferase (38 kDa, Protein from Arabidopsis thaliana)
- At5g53043 (11 kDa, Protein from Arabidopsis thaliana)
- Non-specific serine/threonine protein kinase (25 kDa, Protein from Arabidopsis thaliana)
- Fe (iii) ion (55 Da, Ligand)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7yrg
Q-score: 0.227
Huang L, Wang Y, Long H, Zhu H, Wen Z, Zhang L, Zhang W, Guo Z, Wang L, Tang F, Hu J, Bao K, Zhu P, Li G, Zhou Z
Mol Cell (2023) 83 pp. 2884-2895.e7 [ Pubmed: 37536340 DOI: doi:10.1016/j.molcel.2023.07.001 ]
- Histone,suv420h1 (Complex from Xenopus laevis)
- Histone h2b 1.1 (10 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone methyltransferase and nucleosome complex (Complex)
- Histone h2a.z (12 kDa, Protein from Homo sapiens)
- Dna (146-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.2 (12 kDa, Protein from Xenopus laevis)
- S-adenosylmethionine (398 Da, Ligand)
- [histone h4]-n-methyl-l-lysine20 n-methyltransferase kmt5b (32 kDa, Protein from Homo sapiens)
- Histone (Complex from Homo sapiens)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7yrd
Q-score: 0.484
Huang L, Wang Y, Long H, Zhu H, Wen Z, Zhang L, Zhang W, Guo Z, Wang L, Tang F, Hu J, Bao K, Zhu P, Li G, Zhou Z
Mol Cell (2023) 83 pp. 2884-2895.e7 [ Pubmed: 37536340 DOI: doi:10.1016/j.molcel.2023.07.001 ]
- Histone h2b 1.1 (10 kDa, Protein from Xenopus laevis)
- Zinc ion (65 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a.z (12 kDa, Protein from Homo sapiens)
- Dna (146-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.2 (12 kDa, Protein from Xenopus laevis)
- S-adenosylmethionine (398 Da, Ligand)
- Histone methyltransferase and nucleosome complex (Complex from Homo sapiens)
- [histone h4]-n-methyl-l-lysine20 n-methyltransferase kmt5b (32 kDa, Protein from Homo sapiens)
SARS-CoV-2 spike protein and P17 fab complex with one RBD in close state
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7cwl
Q-score: 0.257
Yao H, Sun Y, Deng YQ, Wang N, Tan Y, Zhang NN, Li XF, Kong C, Xu YP, Chen Q, Cao TS, Zhao H, Yan X, Cao L, Lv Z, Zhu D, Feng R, Wu N, Zhang W, Hu Y, Chen K, Zhang RR, Lv Q, Sun S, Zhou Y, Yan R, Yang G, Sun X, Liu C, Lu X, Cheng L, Qiu H, Huang XY, Weng T, Shi D, Jiang W, Shao J, Wang L, Zhang J, Jiang T, Lang G, Qin CF, Li L, Wang X
Cell Res (2021) 31 pp. 25-36 [ Pubmed: 33262452 DOI: doi:10.1038/s41422-020-00444-y ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab p17 (Complex from Homo sapiens)
- Fab p17 light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Complex of sars-cov-2 spike protein and fab p17 with one rbd in closed state and two rbds in open state. (Complex)
- Fab p17 heavy chain (13 kDa, Protein from Homo sapiens)