Cryo-EM structure of the trimeric HerA
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8yho
Q-score: 0.425
Cryo-EM structure of the trimeric HerA
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8yhx
Q-score: 0.392
Zhen X, Zhou B, Liu Z, Wang X, Zhao H, Wu S, Li Z, Liang J, Zhang W, Zhu Q, He J, Xiong X, Ouyang S
Nat Commun (2024) 15 pp. 9269-9269 [ Pubmed: 39465277 DOI: doi:10.1038/s41467-024-53614-6 ]
- Adenosine-5-diphosphoribose (559 Da, Ligand)
- Duf87 domain-containing protein (65 kDa, Protein from Staphylococcus aureus)
- Cryo-em structure of the trimeric hera (Complex from Staphylococcus aureus)
- Sir2 family protein (50 kDa, Protein from Staphylococcus aureus)
Cryo-EM structure of CXCR4 in complex with CXCL12
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8k3z
Q-score: 0.593
Liu Y, Liu A, Li X, Liao Q, Zhang W, Zhu L, Ye RD
Cell Rep (2024) 43 pp. 114578-114578 [ DOI: doi:10.1016/j.celrep.2024.114578 Pubmed: 39093700 ]
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Cxcr4-cxcl12-gi-scfv16 complex (Complex from Homo sapiens)
- Scfv16 (26 kDa, Protein from Vicugna pacos)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- Stromal cell-derived factor 1 (7 kDa, Protein from Homo sapiens)
- C-x-c chemokine receptor type 4 (33 kDa, Protein from Homo sapiens)
SARS-CoV-2 spike protein and P17 fab complex with one RBD in close state
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7cwl
Q-score: 0.257
Yao H, Sun Y, Deng YQ, Wang N, Tan Y, Zhang NN, Li XF, Kong C, Xu YP, Chen Q, Cao TS, Zhao H, Yan X, Cao L, Lv Z, Zhu D, Feng R, Wu N, Zhang W, Hu Y, Chen K, Zhang RR, Lv Q, Sun S, Zhou Y, Yan R, Yang G, Sun X, Liu C, Lu X, Cheng L, Qiu H, Huang XY, Weng T, Shi D, Jiang W, Shao J, Wang L, Zhang J, Jiang T, Lang G, Qin CF, Li L, Wang X
Cell Res (2021) 31 pp. 25-36 [ Pubmed: 33262452 DOI: doi:10.1038/s41422-020-00444-y ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab p17 heavy chain (13 kDa, Protein from Homo sapiens)
- Fab p17 light chain (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab p17 (Complex from Homo sapiens)
- Complex of sars-cov-2 spike protein and fab p17 with one rbd in closed state and two rbds in open state. (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7cwm
Q-score: 0.277
Yao H, Sun Y, Deng YQ, Wang N, Tan Y, Zhang NN, Li XF, Kong C, Xu YP, Chen Q, Cao TS, Zhao H, Yan X, Cao L, Lv Z, Zhu D, Feng R, Wu N, Zhang W, Hu Y, Chen K, Zhang RR, Lv Q, Sun S, Zhou Y, Yan R, Yang G, Sun X, Liu C, Lu X, Cheng L, Qiu H, Huang XY, Weng T, Shi D, Jiang W, Shao J, Wang L, Zhang J, Jiang T, Lang G, Qin CF, Li L, Wang X
Cell Res (2021) 31 pp. 25-36 [ Pubmed: 33262452 DOI: doi:10.1038/s41422-020-00444-y ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The complex of sars-cov-2 spike protein and p17 with one rbd open and two rbds closed (Complex)
- P17 (Complex from Homo sapiens)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- P17 heavy chain (13 kDa, Protein from Homo sapiens)
- P17 light chain (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
P17-H014 Fab cocktail in complex with SARS-CoV-2 spike protein
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7cwn
Q-score: 0.224
Yao H, Sun Y, Deng YQ, Wang N, Tan Y, Zhang NN, Li XF, Kong C, Xu YP, Chen Q, Cao TS, Zhao H, Yan X, Cao L, Lv Z, Zhu D, Feng R, Wu N, Zhang W, Hu Y, Chen K, Zhang RR, Lv Q, Sun S, Zhou Y, Yan R, Yang G, Sun X, Liu C, Lu X, Cheng L, Qiu H, Huang XY, Weng T, Shi D, Jiang W, Shao J, Wang L, Zhang J, Jiang T, Lang G, Qin CF, Li L, Wang X
Cell Res (2021) 31 pp. 25-36 [ Pubmed: 33262452 DOI: doi:10.1038/s41422-020-00444-y ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- H014 and p17 fab cocktail in complex with sars-cov-2 spike protein (Complex)
- H014 fab (Complex from Homo sapiens)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- P17 fab (Complex from Homo sapiens)
- Heavy chain of h014 fab (22 kDa, Protein from Homo sapiens)
- Light chain of h014 fab (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of p17 fab (22 kDa, Protein from Homo sapiens)
- Light chain of p17 fab (22 kDa, Protein from Homo sapiens)
SARS-CoV-2 spike protein RBD and P17 fab complex
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7cwo
Q-score: 0.372
Yao H, Sun Y, Deng YQ, Wang N, Tan Y, Zhang NN, Li XF, Kong C, Xu YP, Chen Q, Cao TS, Zhao H, Yan X, Cao L, Lv Z, Zhu D, Feng R, Wu N, Zhang W, Hu Y, Chen K, Zhang RR, Lv Q, Sun S, Zhou Y, Yan R, Yang G, Sun X, Liu C, Lu X, Cheng L, Qiu H, Huang XY, Weng T, Shi D, Jiang W, Shao J, Wang L, Zhang J, Jiang T, Lang G, Qin CF, Li L, Wang X
Cell Res (2021) 31 pp. 25-36 [ Pubmed: 33262452 DOI: doi:10.1038/s41422-020-00444-y ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- P17 fab (Complex from Homo sapiens)
- Heavy chain of p17 fab (13 kDa, Protein from Homo sapiens)
- Local reconstruction of sars-cov-2 spike protein and p17 fab complex binding interface (Complex)
- Light chain of p17 fab (11 kDa, Protein from Homo sapiens)
E30 E-particle in complex with 6C5
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7cmk
Q-score: 0.467
Wang K, Zheng B, Zhang L, Cui L, Su X, Zhang Q, Guo Z, Guo Y, Zhang W, Zhu L, Zhu F, Rao Z, Wang X
Nat Commun (2020) 11 pp. 4419-4419 [ DOI: doi:10.1038/s41467-020-18250-w Pubmed: 32887892 ]
- 6c5-fab (Complex from Mus musculus)
- Vp1 (33 kDa, Protein from Echovirus E30)
- Light chain (23 kDa, Protein from Mus musculus)
- Echovirus e30 in complex with 6c5 (Complex)
- Vp2 (36 kDa, Protein from Echovirus E30)
- E30 (Complex from Echovirus E30)
- Heavy chain (23 kDa, Protein from Mus musculus)
- Vp3 (26 kDa, Protein from Echovirus E30)
E30 F-particle in complex with 4B10
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7c80
Q-score: 0.46
Wang K, Zheng B, Zhang L, Cui L, Su X, Zhang Q, Guo Z, Guo Y, Zhang W, Zhu L, Zhu F, Rao Z, Wang X
Nat Commun (2020) 11 pp. 4419-4419 [ DOI: doi:10.1038/s41467-020-18250-w Pubmed: 32887892 ]
- E30 f-particle in complex with 4b10 (Complex from Mus musculus)
- Vp2 (28 kDa, Protein from Echovirus E30)
- Vp4 (7 kDa, Protein from Echovirus E30)
- Heavy chain (21 kDa, Protein from Mouse)
- Vp1 (33 kDa, Protein from Echovirus E30)
- Vp3 (26 kDa, Protein from Echovirus E30)
- E30 f-particle in complex with 4b10 (Complex)
- Sphingosine (299 Da, Ligand)
- E30 f-particle in complex with 4b10 (Complex from Echovirus E30)
- Light chain (24 kDa, Protein from Mouse)