Capsid of empty GTA particle computed with C5 symmetry
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6tsu
Q-score: 0.532
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
- Head spike (Complex from Rhodobacter capsulatus DE442)
- Major capsid protein rcc01687 (40 kDa, Protein from Rhodobacter capsulatus DE442)
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus DE442)
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus DE442)
- Rhodobacter capsulatus de442 gene transfer agent capsid (80 kDa, Complex from Rhodobacter capsulatus DE442)
Neck of native GTA particle computed with C12 symmetry
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 6te8
Q-score: 0.523
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
- Adaptor protein rcc01688 (20 kDa, Protein from Rhodobacter capsulatus)
- Rhodobacter capsulatus de442 gene transfer agent connector (760 kDa, Complex from Rhodobacter capsulatus DE442)
- Phage portal protein, hk97 family (42 kDa, Protein from Rhodobacter capsulatus)
Tail-baseplate interface of native GTA particle computed with C6 symmetry
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 6teb
Q-score: 0.352
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
Neck of empty GTA particle computed with C12 symmetry
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 6to8
Q-score: 0.514
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
- Rhodobacter capsulatus de442 gene transfer agent connector (760 kDa, Complex from Rhodobacter capsulatus DE442)
- Portal protein rcc01684 (42 kDa, Protein from Rhodobacter capsulatus DE442)
- Adaptor protein rcc01688 (20 kDa, Protein from Rhodobacter capsulatus DE442)
Neck of empty GTA particle computed with C6 symmetry
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 6toa
Q-score: 0.513
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
- Connector (Complex from Rhodobacter capsulatus DE442)
- Adaptor protein rcc01688 (20 kDa, Protein from Rhodobacter capsulatus DE442)
- Portal protein rcc01684 (42 kDa, Protein from Rhodobacter capsulatus DE442)
- Tail terminator protein rcc01690 (13 kDa, Protein from Rhodobacter capsulatus DE442)
- Tail (Complex from Rhodobacter capsulatus DE442)
- Tail tube protein rcc01691 (14 kDa, Protein from Rhodobacter capsulatus DE442)
- Stopper protein rcc01689 (12 kDa, Protein from Rhodobacter capsulatus DE442)
- Rhodobacter capsulatus de442 gene transfer agent neck (240 kDa, Complex from Rhodobacter capsulatus DE442)
Tail of empty GTA particle computed with helical refinement, C6 symmetry
Resolution: 3.78 Å
EM Method: Helical reconstruction
Fitted PDBs: 6tsv
Q-score: 0.468
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
Isometric capsid of empty GTA particle computed with I4(I,n25r) symmetry
Resolution: 4.03 Å
EM Method: Single-particle
Fitted PDBs: 6tsw
Q-score: 0.434
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
Capsid-neck interface of native GTA particle, asymmetric reconstruction
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
- Head spike (Complex from Rhodobacter capsulatus DE442)
- Stopper protein rcc01689 (Protein from Rhodobacter capsulatus DE442)
- Capsid (Complex from Rhodobacter capsulatus DE442)
- Head spike fiber rcc01080 (Protein from Rhodobacter capsulatus DE442)
- Tail terminator protein rcc01690 (Protein from Rhodobacter capsulatus DE442)
- Rhodobacter capsulatus de442 gene transfer agent (880 kDa, Complex from Rhodobacter capsulatus DE442)
- Adaptor protein rcc01688 (Protein from Rhodobacter capsulatus DE442)
- Major capsid protein rcc01687 (Protein from Rhodobacter capsulatus DE442)
- Connector (Complex from Rhodobacter capsulatus DE442)
- Head spike base rcc01079 (Protein from Rhodobacter capsulatus DE442)
- Portal protein rcc01684 (Protein from Rhodobacter capsulatus DE442)
- Tail (Complex from Rhodobacter capsulatus DE442)
Capsid-neck interface of empty GTA particle, asymmetric reconstruction
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
- Head spike (Complex from Rhodobacter capsulatus DE442)
- Rhodobacter capsulatus de442 gene transfer agent (760 kDa, Complex from Rhodobacter capsulatus DE442)
- Stopper protein rcc01689 (Protein from Rhodobacter capsulatus DE442)
- Capsid (Complex from Rhodobacter capsulatus DE442)
- Head spike fiber rcc01080 (Protein from Rhodobacter capsulatus DE442)
- Connector (Complex from Rhodobacter capsulatus DE442)
- Tail terminator protein rcc01690 (Protein from Rhodobacter capsulatus DE442)
- Adaptor protein rcc01688 (Protein from Rhodobacter capsulatus DE442)
- Major capsid protein rcc01687 (Protein from Rhodobacter capsulatus DE442)
- Tail (Complex from Rhodobacter capsulatus DE442)
- Head spike base rcc01079 (Protein from Rhodobacter capsulatus DE442)
- Portal protein rcc01684 (Protein from Rhodobacter capsulatus DE442)