Capsid of bacteriophage JBD30 decorated with minor capsid protein trimers computed in I4 symmetry
Valentova L, Fuzik T, Novacek J, Hlavenkova Z, Pospisil J, Plevka P
EMBO J (2024) 43 pp. 4384-4405 [ Pubmed: 39143239 DOI: doi:10.1038/s44318-024-00195-1 ]
Valentova L, Fuzik T, Novacek J, Hlavenkova Z, Pospisil J, Plevka P
EMBO J (2024) 43 pp. 4384-4405 [ Pubmed: 39143239 DOI: doi:10.1038/s44318-024-00195-1 ]
- Bacteriophage mu gpt domain-containing protein (33 kDa, Protein from Pseudomonas phage JBD30)
- Pseudomonas phage jbd30 (14 MDa, Virus from Pseudomonas phage JBD30)
Bacteriophage JBD30 empty particle capsid
Valentova L, Fuzik T, Novacek J, Hlavenkova Z, Pospisil J, Plevka P
EMBO J (2024) 43 pp. 4384-4405 [ Pubmed: 39143239 DOI: doi:10.1038/s44318-024-00195-1 ]
- Bacteriophage mu gpt domain-containing protein (33 kDa, Protein from Pseudomonas phage JBD30)
- Pseudomonas phage jbd30 (13 MDa, Virus from Pseudomonas phage JBD30)
Cryo-EM structure of coxsackievirus A6 altered particle
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7qvx
Q-score: 0.663
Buttner CR, Spurny R, Fuzik T, Plevka P
Commun Biol (2022) 5 pp. 898-898 [ DOI: doi:10.1038/s42003-022-03863-2 Pubmed: 36056184 ]
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A6)
- Coxsackievirus a6 (8 MDa, Complex from Coxsackievirus A6)
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A6)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus A6)
Cryo-EM structure of coxsackievirus A6 empty particle
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 7qvy
Q-score: 0.63
Buttner CR, Spurny R, Fuzik T, Plevka P
Commun Biol (2022) 5 pp. 898-898 [ DOI: doi:10.1038/s42003-022-03863-2 Pubmed: 36056184 ]
- Capsid (Complex from Coxsackievirus A6)
- Coxsackievirus a6 (5 MDa, Virus from Coxsackievirus A6)
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A6)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus A6)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A6)
Cryo-EM structure of coxsackievirus A6 mature virion
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7qw9
Q-score: 0.588
Buttner CR, Spurny R, Fuzik T, Plevka P
Commun Biol (2022) 5 pp. 898-898 [ DOI: doi:10.1038/s42003-022-03863-2 Pubmed: 36056184 ]
- Coxsackievirus a6 (8 MDa, Virus from Coxsackievirus A6)
- Myristic acid (228 Da, Ligand)
- Capsid (Complex from Coxsackievirus A6)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus A6)
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A6)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus A6)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A6)
- Stearic acid (284 Da, Ligand)
Empty capsid of Saccharomyces cerevisiae virus L-BCLa
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7qwx
Q-score: 0.551
Grybchuk D, Prochazkova M, Fuzik T, Konovalovas A, Serva S, Yurchenko V, Plevka P
Commun Biol (2022) 5 pp. 847-847 [ DOI: doi:10.1038/s42003-022-03793-z Pubmed: 35986212 ]
CryoEM structure of human enterovirus 70 in complex with Pleconaril
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 7ozk
Q-score: 0.654
Fuzik T, Moravcova J, Kalynych S, Plevka P
J Virol (2022) 96 pp. e0060422-e0060422 [ DOI: doi:10.1128/jvi.00604-22 Pubmed: 35939401 ]
- 3-{3,5-dimethyl-4-[3-(3-methyl-isoxazol-5-yl)-propoxy]-phenyl}-5-trifluoromethyl-[1,2,4]oxadiazole (381 Da, Ligand)
- Capsid protein vp2 (27 kDa, Protein from Human enterovirus 70 (strain J670/71))
- Capsid protein vp1 (33 kDa, Protein from Human enterovirus 70 (strain J670/71))
- Capsid protein vp3 (26 kDa, Protein from Human enterovirus 70 (strain J670/71))
- Capsid protein vp4 (7 kDa, Protein from Human enterovirus 70 (strain J670/71))
- Human enterovirus 70 (strain j670/71) (5 MDa, Virus from Human enterovirus 70 (strain J670/71))
- Water (18 Da, Ligand)
CryoEM structure of human enterovirus 70 in complex with WIN51711
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 7ozl
Q-score: 0.595
Fuzik T, Moravcova J, Kalynych S, Plevka P
J Virol (2022) 96 pp. e0060422-e0060422 [ DOI: doi:10.1128/jvi.00604-22 Pubmed: 35939401 ]
- Capsid protein vp2 (27 kDa, Protein from Human enterovirus 70 (strain J670/71))
- Capsid protein vp1 (33 kDa, Protein from Human enterovirus 70 (strain J670/71))
- Capsid protein vp3 (26 kDa, Protein from Human enterovirus 70 (strain J670/71))
- Capsid protein vp4 (7 kDa, Protein from Human enterovirus 70 (strain J670/71))
- 5-(7-(4-(4,5-dihydro-2-oxazolyl)phenoxy)heptyl)-3-methyl isoxazole (342 Da, Ligand)
- Human enterovirus 70 (strain j670/71) (5 MDa, Virus from Human enterovirus 70 (strain J670/71))
- Water (18 Da, Ligand)
CryoEM structure of human enterovirus 70 native virion
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 7opx
Q-score: 0.632
Fuzik T, Moravcova J, Kalynych S, Plevka P
J Virol (2022) 96 pp. e0060422-e0060422 [ DOI: doi:10.1128/jvi.00604-22 Pubmed: 35939401 ]
- Capsid protein vp2 (27 kDa, Protein from Human enterovirus 70 (strain J670/71))
- Capsid protein vp3 (26 kDa, Protein from Human enterovirus 70 (strain J670/71))
- Capsid protein vp4 (7 kDa, Protein from Human enterovirus 70 (strain J670/71))
- Capsid protein vp1 (34 kDa, Protein from Human enterovirus 70 (strain J670/71))
- Human enterovirus 70 (strain j670/71) (5 MDa, Virus from Human enterovirus 70 (strain J670/71))
- Water (18 Da, Ligand)