Local refined map of VPS35L(partial)-VPS26C-SNX17
Singla A, Boesch DJ, Fung HYJ, Ngoka C, Enriquez AS, Song R, Kramer DA, Han Y, Banarer E, Lemoff A, Juneja P, Billadeau DD, Bai X, Chen Z, Turer EE, Burstein E, Chen B
Nat Commun (2024) 15 pp. 10193-10193 [ DOI: doi:10.1038/s41467-024-54583-6 Pubmed: 39587083 ]
Local refined map of VPS35L(partial)-VPS29
Singla A, Boesch DJ, Fung HYJ, Ngoka C, Enriquez AS, Song R, Kramer DA, Han Y, Banarer E, Lemoff A, Juneja P, Billadeau DD, Bai X, Chen Z, Turer EE, Burstein E, Chen B
Nat Commun (2024) 15 pp. 10193-10193 [ DOI: doi:10.1038/s41467-024-54583-6 Pubmed: 39587083 ]
Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Composite Map)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9au7
Q-score: 0.202
Singla A, Boesch DJ, Fung HYJ, Ngoka C, Enriquez AS, Song R, Kramer DA, Han Y, Banarer E, Lemoff A, Juneja P, Billadeau DD, Bai X, Chen Z, Turer EE, Burstein E, Chen B
Nat Commun (2024) 15 pp. 10193-10193 [ DOI: doi:10.1038/s41467-024-54583-6 Pubmed: 39587083 ]
- Sorting nexin-17 (2 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 26c (33 kDa, Protein from Homo sapiens)
- Trimeric complex of vps35/vps29/vps26 with excess snx17 peptide (Complex from Homo sapiens)
- Vacuolar protein sorting-associated protein 29 (23 kDa, Protein from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Consensus map)
Singla A, Boesch DJ, Fung HYJ, Ngoka C, Enriquez AS, Song R, Kramer DA, Han Y, Banarer E, Lemoff A, Juneja P, Billadeau DD, Bai X, Chen Z, Turer EE, Burstein E, Chen B
Nat Commun (2024) 15 pp. 10193-10193 [ DOI: doi:10.1038/s41467-024-54583-6 Pubmed: 39587083 ]
- Sorting nexin-17 (Protein from Homo sapiens)
- Trimeric complex of vps35/vps29/vps26 with excess snx17 peptide (Complex from Homo sapiens)
- Vacuolar protein sorting-associated protein 26c (Protein from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 29 (Protein from Homo sapiens)
Cryo-EM structure of human cohesin-CTCF-DNA complex
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 7w1m
Q-score: 0.163
Zhang H, Shi Z, Banigan EJ, Kim Y, Yu H, Bai XC, Finkelstein IJ
Mol Cell (2023) 83 pp. 2856-2871.e8 [ Pubmed: 37536339 DOI: doi:10.1016/j.molcel.2023.07.006 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna (Complex)
- Dna (118-mer) (36 kDa, DNA from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Cohesin subunit sa-1 (144 kDa, Protein from Homo sapiens)
- Structural maintenance of chromosomes protein 1a (143 kDa, Protein from Homo sapiens)
- Human cohesin-nipbl-ctcf-dna complex (Complex from Homo sapiens)
- Beryllium trifluoride ion (66 Da, Ligand)
- Structural maintenance of chromosomes protein 3 (141 kDa, Protein from Homo sapiens)
- Nipped-b-like protein (167 kDa, Protein from Homo sapiens)
- Double-strand-break repair protein rad21 homolog (71 kDa, Protein from Homo sapiens)
- Human cohesin-nipbl-ctcf (Complex)
- Dna (118-mer) (36 kDa, DNA from Homo sapiens)
- Transcriptional repressor ctcf (82 kDa, Protein from Homo sapiens)
Cryo-EM structure of 2:2 c-MET/HGF holo-complex
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7mo7
Q-score: 0.233
Uchikawa E, Chen Z, Xiao GY, Zhang X, Bai XC
Nat Commun (2021) 12 pp. 4074-4074 [ DOI: doi:10.1038/s41467-021-24367-3 Pubmed: 34210960 ]
- 2:2 c-met/hgf holo-complex (Complex from Homo sapiens)
- Hepatocyte growth factor (83 kDa, Protein from Homo sapiens)
- Hepatocyte growth factor receptor (155 kDa, Protein from Homo sapiens)
Cryo-EM structure of 1:1 c-MET I/HGF I complex after focused 3D refinement of holo-complex
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7mo8
Q-score: 0.324
Uchikawa E, Chen Z, Xiao GY, Zhang X, Bai XC
Nat Commun (2021) 12 pp. 4074-4074 [ DOI: doi:10.1038/s41467-021-24367-3 Pubmed: 34210960 ]
- Hepatocyte growth factor receptor (155 kDa, Protein from Homo sapiens)
- Hepatocyte growth factor (83 kDa, Protein from Homo sapiens)
- 1:1 c-met i/hgf i complex (Complex from Homo sapiens)
Cryo-EM map of the c-MET II/HGF I/HGF II (K4 and SPH) sub-complex
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7mo9
Q-score: 0.41
Uchikawa E, Chen Z, Xiao GY, Zhang X, Bai XC
Nat Commun (2021) 12 pp. 4074-4074 [ DOI: doi:10.1038/s41467-021-24367-3 Pubmed: 34210960 ]
- C-met ii/hgf i/hgf ii (k4 and sph) sub-complex (Complex from Homo sapiens)
- Hepatocyte growth factor (83 kDa, Protein from Homo sapiens)
- Hepatocyte growth factor receptor (155 kDa, Protein from Homo sapiens)
Cryo-EM structure of the c-MET II/HGF I complex bound with HGF II in a rigid conformation
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 7moa
Q-score: 0.23
Uchikawa E, Chen Z, Xiao GY, Zhang X, Bai XC
Nat Commun (2021) 12 pp. 4074-4074 [ DOI: doi:10.1038/s41467-021-24367-3 Pubmed: 34210960 ]
- The c-met ii/hgf i complex bound with hgf ii in a rigid conformation (Complex from Homo sapiens)
- Hepatocyte growth factor receptor (155 kDa, Protein from Homo sapiens)
- Hepatocyte growth factor (83 kDa, Protein from Homo sapiens)
Cryo-EM structure of 2:2 c-MET/NK1 complex
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 7mob
Q-score: 0.296
Uchikawa E, Chen Z, Xiao GY, Zhang X, Bai XC
Nat Commun (2021) 12 pp. 4074-4074 [ DOI: doi:10.1038/s41467-021-24367-3 Pubmed: 34210960 ]
- Hepatocyte growth factor (24 kDa, Protein from Homo sapiens)
- Hepatocyte growth factor receptor (155 kDa, Protein from Homo sapiens)
- 2:2 c-met/nk1 complex (Complex from Homo sapiens)