Human alpha3 Na+/K+-ATPase in its Na+-occluded state
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8d3u
Q-score: 0.444
Nguyen PT, Deisl C, Fine M, Tippetts TS, Uchikawa E, Bai XC, Levine B
Nat Commun (2022) 13 pp. 5293-5293 [ Pubmed: 36075933 DOI: doi:10.1038/s41467-022-32990-x ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Sodium/potassium-transporting atpase subunit alpha-3 (111 kDa, Protein from Homo sapiens)
- Na+/k+-atpase (Complex from Homo sapiens)
- Fxyd domain-containing ion transport regulator 6 (10 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- Tetrafluoroaluminate ion (102 Da, Ligand)
Human alpha3 Na+/K+-ATPase in its cytoplasmic side-open state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8d3v
Q-score: 0.495
Nguyen PT, Deisl C, Fine M, Tippetts TS, Uchikawa E, Bai XC, Levine B
Nat Commun (2022) 13 pp. 5293-5293 [ Pubmed: 36075933 DOI: doi:10.1038/s41467-022-32990-x ]
- Sodium/potassium-transporting atpase subunit alpha-3 (111 kDa, Protein from Homo sapiens)
- Fxyd domain-containing ion transport regulator 6 (10 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- Na+/k+-atpase (Complex from Homo sapiens)
Human alpha3 Na+/K+-ATPase in its AMPPCP-bound cytoplasmic side-open state
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8d3w
Q-score: 0.493
Nguyen PT, Deisl C, Fine M, Tippetts TS, Uchikawa E, Bai XC, Levine B
Nat Commun (2022) 13 pp. 5293-5293 [ Pubmed: 36075933 DOI: doi:10.1038/s41467-022-32990-x ]
- Sodium/potassium-transporting atpase subunit alpha-3 (111 kDa, Protein from Homo sapiens)
- Na+/k+-atpase (Complex from Homo sapiens)
- Fxyd domain-containing ion transport regulator 6 (10 kDa, Protein from Homo sapiens)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
Human alpha3 Na+/K+-ATPase in its K+-occluded state
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8d3x
Q-score: 0.416
Nguyen PT, Deisl C, Fine M, Tippetts TS, Uchikawa E, Bai XC, Levine B
Nat Commun (2022) 13 pp. 5293-5293 [ Pubmed: 36075933 DOI: doi:10.1038/s41467-022-32990-x ]
- Sodium/potassium-transporting atpase subunit alpha-3 (111 kDa, Protein from Homo sapiens)
- Na+/k+-atpase (Complex from Homo sapiens)
- Fxyd domain-containing ion transport regulator 6 (10 kDa, Protein from Homo sapiens)
- Tetrafluoromagnesate(2-) (100 Da, Ligand)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
Human alpha3 Na+/K+-ATPase in its exoplasmic side-open state
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8d3y
Q-score: 0.438
Nguyen PT, Deisl C, Fine M, Tippetts TS, Uchikawa E, Bai XC, Levine B
Nat Commun (2022) 13 pp. 5293-5293 [ Pubmed: 36075933 DOI: doi:10.1038/s41467-022-32990-x ]
- Fxyd domain-containing ion transport regulator 6 (10 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit alpha-3 (111 kDa, Protein from Homo sapiens)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- Na+/k+-atpase (Complex from Homo sapiens)
Cryo-EM structure of spike binding to Fab of neutralizing antibody (locally refined)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8dt3
Q-score: 0.458
Fang Y, Sun P, Xie X, Du M, Du F, Ye J, Kalveram BK, Plante JA, Plante KS, Li B, Bai XC, Shi PY, Chen ZJ
Sci Immunol (2022) 7 pp. eabp9962-eabp9962 [ DOI: doi:10.1126/sciimmunol.abp9962 Pubmed: 35926067 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain fab of sw186 (25 kDa, Protein from Mus musculus)
- Rbd-sd1 of spike in complex with fab from a neutralizing antibody (Complex from Mus musculus)
- Heavy chain fab of sw186 (24 kDa, Protein from Mus musculus)
Cryo-EM structure of STRIPAK complex
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7k36
Q-score: 0.43
Jeong BC, Bae SJ, Ni L, Zhang X, Bai XC, Luo X
Nat Struct Mol Biol (2021) 28 pp. 290-299 [ DOI: doi:10.1038/s41594-021-00564-y Pubmed: 33633399 ]
- Zinc ion (65 Da, Ligand)
- Striatin-3 (77 kDa, Protein from Homo sapiens)
- Serine/threonine-protein phosphatase 2a catalytic subunit alpha isoform (35 kDa, Protein from Homo sapiens)
- Sk7 complex (817 kDa, Complex from Homo sapiens)
- Striatin-interacting protein 1 (95 kDa, Protein from Homo sapiens)
- Mob-like protein phocein (26 kDa, Protein from Homo sapiens)
- Serine/threonine-protein phosphatase 2a 65 kda regulatory subunit a alpha isoform (65 kDa, Protein from Homo sapiens)
- Manganese (ii) ion (54 Da, Ligand)
- Inositol hexakisphosphate (660 Da, Ligand)
human KCC1 structure determined in KCl and detergent GDN
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6kkr
Q-score: 0.559
Liu S, Chang S, Han B, Xu L, Zhang M, Zhao C, Yang W, Wang F, Li J, Delpire E, Ye S, Bai XC, Guo J
Science (2019) 366 pp. 505-508 [ Pubmed: 31649201 DOI: doi:10.1126/science.aay3129 ]
- Potassium ion (39 Da, Ligand)
- Solute carrier family 12 member 4 (122 kDa, Protein from Homo sapiens)
- Potassium chloride co-transporter 1 (Complex from Homo sapiens)
- 2-[2-[(1~{s},2~{s},4~{s},5'~{r},6~{r},7~{s},8~{r},9~{s},12~{s},13~{r},16~{s})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol (516 Da, Ligand)
- Chloride ion (35 Da, Ligand)
human KCC1 structure determined in KCl and lipid nanodisc
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6kkt
Q-score: 0.559
Liu S, Chang S, Han B, Xu L, Zhang M, Zhao C, Yang W, Wang F, Li J, Delpire E, Ye S, Bai XC, Guo J
Science (2019) 366 pp. 505-508 [ Pubmed: 31649201 DOI: doi:10.1126/science.aay3129 ]
- Potassium ion (39 Da, Ligand)
- Solute carrier family 12 member 4 (122 kDa, Protein from Homo sapiens)
- Potassium chloride co-transporter 1 (Complex from Homo sapiens)
- 2-[2-[(1~{s},2~{s},4~{s},5'~{r},6~{r},7~{s},8~{r},9~{s},12~{s},13~{r},16~{s})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol (516 Da, Ligand)
- Chloride ion (35 Da, Ligand)
human KCC1 structure determined in NaCl and GDN
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6kku
Q-score: 0.469
Liu S, Chang S, Han B, Xu L, Zhang M, Zhao C, Yang W, Wang F, Li J, Delpire E, Ye S, Bai XC, Guo J
Science (2019) 366 pp. 505-508 [ Pubmed: 31649201 DOI: doi:10.1126/science.aay3129 ]
- 2-[2-[(1~{s},2~{s},4~{s},5'~{r},6~{r},7~{s},8~{r},9~{s},12~{s},13~{r},16~{s})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol (516 Da, Ligand)
- Potassium chloride co-transporter 1 (Complex from Homo sapiens)
- Solute carrier family 12 member 4 (122 kDa, Protein from Homo sapiens)
- Chloride ion (35 Da, Ligand)