Pennington LF, Gasser P, Kleinboelting S, Zhang C, Skiniotis G, Eggel A, Jardetzky TS
Nat Commun (2021) 12 [ Pubmed: 34862384 DOI: 10.1038/s41467-021-27397-z ]
Image sets:
Cannabinoid Receptor 1-G Protein Complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ghv
Q-score: 0.569
Krishna Kumar K, Robertson MJ, Thadhani E, Wang H, Suomivuori CM, Powers AS, Ji L, Nikas SP, Dror RO, Inoue A, Makriyannis A, Skiniotis G, Kobilka B
Nat Commun (2023) 14 pp. 2672-2672 [ Pubmed: 37160876 DOI: doi:10.1038/s41467-023-37864-4 ]
- Cannabinoid receptor 1 (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- (5z,8z,11z,13s,14z)-n-[(2r)-1-hydroxypropan-2-yl]-13-methylicosa-5,8,11,14-tetraenamide (375 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Gi g protein heterotrimer (Complex from Homo sapiens)
- Cannabinoid receptor 1 in complex with gi protein heterotrimer and scfv16 (Complex from Homo sapiens)
- Cannabinoid receptor 1 (55 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Scfv16 (Complex from Mus musculus)
- Scfv16 (27 kDa, Protein from Mus musculus)
Cannabinoid Receptor 1/G protein complex, Global Refinement
Krishna Kumar K, Robertson MJ, Thadhani E, Wang H, Suomivuori CM, Powers AS, Ji L, Nikas SP, Dror RO, Inoue A, Makriyannis A, Skiniotis G, Kobilka B
Nat Commun (2023) 14 pp. 2672-2672 [ Pubmed: 37160876 DOI: doi:10.1038/s41467-023-37864-4 ]
Cannabinoid Receptor 1/G protein complex, local refinement
Krishna Kumar K, Robertson MJ, Thadhani E, Wang H, Suomivuori CM, Powers AS, Ji L, Nikas SP, Dror RO, Inoue A, Makriyannis A, Skiniotis G, Kobilka B
Nat Commun (2023) 14 pp. 2672-2672 [ Pubmed: 37160876 DOI: doi:10.1038/s41467-023-37864-4 ]
The structure of Formyl Peptide Receptor 1 in complex with Gi and peptide agonist fMIFL
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7vfx
Q-score: 0.574
Chen G, Wang X, Liao Q, Ge Y, Jiao H, Chen Q, Liu Y, Lyu W, Zhu L, van Zundert GCP, Robertson MJ, Skiniotis G, Du Y, Hu H, Ye RD
Nat Commun (2022) 13 pp. 5232-5232 [ DOI: doi:10.1038/s41467-022-32822-y Pubmed: 36064945 ]
- Peptide agonist fmifl (Complex)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Palmitic acid (256 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Scfv16 (28 kDa, Protein from Mus musculus)
- Fpr1 with gi (Complex)
- Peptide agonist fmifl (550 Da, Protein from Staphylococcus aureus)
- Fmet-leu-phe receptor (41 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Complex of fpr1 with gi and peptide agonist fmifl (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
The structure of formyl peptide receptor 1 in complex with Gi and peptide agonist fMLF
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7euo
Q-score: 0.525
Chen G, Wang X, Liao Q, Ge Y, Jiao H, Chen Q, Liu Y, Lyu W, Zhu L, van Zundert GCP, Robertson MJ, Skiniotis G, Du Y, Hu H, Ye RD
Nat Commun (2022) 13 pp. 5232-5232 [ DOI: doi:10.1038/s41467-022-32822-y Pubmed: 36064945 ]
- Peptide agonist fmlf (437 Da, Protein from Escherichia coli)
- Peptdie agonist fmlf (Complex)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Scfv16 (28 kDa, Protein from Mus musculus)
- Fpr1 with gi (Complex from Mus musculus)
- Scfv16 (Complex)
- Fmet-leu-phe receptor (41 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Complex of fpr1 with gi and peptdie agonist fmlf (Complex from Homo sapiens)
Structure of a partially disrupted IgE high affinity receptor complex bound to an omalizumab variant
Resolution: 7.29 Å
EM Method: Single-particle
Fitted PDBs: 7sht
Q-score: 0.217
Pennington LF, Gasser P, Kleinboelting S, Zhang C, Skiniotis G, Eggel A, Jardetzky TS
Nat Commun (2021) 12 pp. 7069-7069 [ Pubmed: 34862384 DOI: doi:10.1038/s41467-021-27397-z ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Clone_7 variable fragment light chain (14 kDa, Protein from Homo sapiens)
- High affinity immunoglobulin epsilon receptor subunit alpha (22 kDa, Protein from Homo sapiens)
- Immunoglobulin heavy constant epsilon (35 kDa, Protein from Homo sapiens)
- Locked complex of ige-fc (g335c) and alpha chain of the high affinity ige receptor (w156c) bound to clone_7 scfv (Complex from Homo sapiens)
- Clone_7 variable fragment heavy chain (13 kDa, Protein from Homo sapiens)
Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6az1
Q-score: 0.566
Shalev-Benami M, Zhang Y, Rozenberg H, Nobe Y, Taoka M, Matzov D, Zimmerman E, Bashan A, Isobe T, Jaffe CL, Yonath A, Skiniotis G
Nat Commun (2017) 8 pp. 1589-1589 [ Pubmed: 29150609 DOI: doi:10.1038/s41467-017-01664-4 ]
- Ribosomal protein s17e (16 kDa, Protein from Leishmania donovani)
- Leishmania donovani 91s ribosome ssu (Complex from Leishmania donovani)
- Ribosomal protein s8e (25 kDa, Protein from Leishmania donovani)
- Ribosomal protein s24e (15 kDa, Protein from Leishmania donovani)
- Ribosomal protein s4 (22 kDa, Protein from Leishmania donovani)
- Ribosomal protein s19e (20 kDa, Protein from Leishmania donovani)
- Ribosomal protein s12e (15 kDa, Protein from Leishmania donovani)
- Ribosomal protein s4e (30 kDa, Protein from Leishmania donovani)
- Ribosomal protein s10e (17 kDa, Protein from Leishmania donovani)
- Ribosomal protein s19 (17 kDa, Protein from Leishmania donovani)
- Ribosomal protein s31e (17 kDa, Protein from Leishmania donovani)
- Ribosomal protein s17 (19 kDa, Protein from Leishmania donovani)
- Ribosomal protein s27e (9 kDa, Protein from Leishmania donovani)
- Ribosomal protein s2 (27 kDa, Protein from Leishmania donovani)
- Mrna (4 kDa, RNA from Leishmania donovani)
- Ribosomal protein s11 (15 kDa, Protein from Leishmania donovani)
- Paromomycin (615 Da, Ligand)
- E-site trna (24 kDa, RNA from Escherichia coli)
- Ribosomal protein s8 (14 kDa, Protein from Leishmania donovani)
- Ribosomal protein s10 (13 kDa, Protein from Leishmania donovani)
- Ribosomal protein s3 (24 kDa, Protein from Leishmania donovani)
- Ribosomal protein s28e (9 kDa, Protein from Leishmania donovani)
- Water (18 Da, Ligand)
- Ribosomal protein s1e (30 kDa, Protein from Leishmania donovani)
- Ribosomal protein s12 (15 kDa, Protein from Leishmania donovani)
- Ribosomal rna 18s (710 kDa, RNA from Leishmania donovani)
- Ribosomal protein s15 (17 kDa, Protein from Leishmania donovani)
- Ribosomal protein s7e (23 kDa, Protein from Leishmania donovani)
- Ribosomal protein s21e (16 kDa, Protein from Leishmania donovani)
- Trna-phe (24 kDa, RNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein s30e (7 kDa, Protein from Leishmania donovani)
- Ribosomal protein s26e (12 kDa, Protein from Leishmania donovani)
- Lack1 (34 kDa, Protein from Leishmania donovani)
- Ribosomal protein s25e (13 kDa, Protein from Leishmania donovani)
- Ribosomal protein s14 (6 kDa, Protein from Leishmania donovani)
- Ribosomal protein s5 (28 kDa, Protein from Leishmania donovani)
- Ribosomal protein s9 (16 kDa, Protein from Leishmania donovani)
- Ribosomal protein s13 (17 kDa, Protein from Leishmania donovani)
- Ribosomal protein s7 (21 kDa, Protein from Leishmania donovani)
- P-site trna (24 kDa, RNA from Escherichia coli)
- Ribosomal protein s6e (28 kDa, Protein from Leishmania donovani)
Cryo-EM structure of of the large subunit of Leishmania ribosome bound to paromomycin
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6az3
Q-score: 0.599
Shalev-Benami M, Zhang Y, Rozenberg H, Nobe Y, Taoka M, Matzov D, Zimmerman E, Bashan A, Isobe T, Jaffe CL, Yonath A, Skiniotis G
Nat Commun (2017) 8 pp. 1589-1589 [ Pubmed: 29150609 DOI: doi:10.1038/s41467-017-01664-4 ]
- Ribosomal protein ul13 (25 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l23, putative (14 kDa, Protein from Leishmania donovani)
- Ribosomal protein l19e family protein (22 kDa, Protein from Leishmania donovani)
- Rrna alpha (575 kDa, RNA from Leishmania donovani)
- Ribosomal protein ul24 (13 kDa, Protein from Leishmania donovani)
- Ribosomal protein el24 (7 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l36, putative (11 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l7 family protein (26 kDa, Protein from Leishmania donovani)
- Ribosomal protein l35ae family protein (14 kDa, Protein from Leishmania donovani)
- Rrna epsilon (42 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l34, putative (14 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l9, putative (21 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l17, putative (17 kDa, Protein from Leishmania donovani)
- 60s_ribosomal_protein_l35_putative/genedb:lmjf.26.2330/genedb:lmjf.26.2340 (14 kDa, Protein from Leishmania donovani)
- 60s ribosomal subunit protein l31, putative (13 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l11 (l5, l16) (19 kDa, Protein from Leishmania donovani)
- Rrna 5s (37 kDa, RNA from Leishmania donovani)
- 60s_ribosomal_protein_l32/genedb:lmjf.21.1720 (15 kDa, Protein from Leishmania donovani)
- Ribosomal protein ul2 (27 kDa, Protein from Leishmania donovani)
- Ribosomal l38e family protein (8 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l18a (20 kDa, Protein from Leishmania donovani)
- Paromomycin (615 Da, Ligand)
- Ribosomal protein l1a, putative (40 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l21, putative (17 kDa, Protein from Leishmania donovani)
- Ribosomal l27e family protein (15 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l44, putative (11 kDa, Protein from Leishmania donovani)
- Water (18 Da, Ligand)
- Ribosomal protein el6 (21 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l37a (10 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l39, putative (6 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l30 (10 kDa, Protein from Leishmania donovani)
- Ribosomal protein el41 (4 kDa, Protein from Leishmania donovani)
- Rrna 5.8s (54 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l18, putative (21 kDa, Protein from Leishmania donovani)
- Ribosomal protein ul3 (45 kDa, Protein from Leishmania donovani)
- Rrna delta (59 kDa, RNA from Leishmania donovani)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l22, putative (14 kDa, Protein from Leishmania donovani)
- Leishmania donovani 91s ribosome lsu (Complex from Leishmania donovani)
- Rrna gamma (67 kDa, RNA from Leishmania donovani)
- Rrna beta (492 kDa, RNA from Leishmania donovani)
- 60s ribosomal protein l37 (9 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l27a/l29, putative (16 kDa, Protein from Leishmania donovani)
- Rrna zeta (22 kDa, RNA from Leishmania donovani)
- Ubiquitin-60s ribosomal protein l40 (5 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l28, putative (15 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l29 (7 kDa, Protein from Leishmania donovani)
- Probable 60s ribosomal protein l14 (17 kDa, Protein from Leishmania donovani)
- Ribosomal protein l15 (24 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l7a (39 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l23a, putative (13 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l10, putative (24 kDa, Protein from Leishmania donovani)
- Ribosomal protein el13 (23 kDa, Protein from Leishmania donovani)
- 60s ribosomal protein l5, putative (34 kDa, Protein from Leishmania donovani)