BG505 SOSIP.664 with 2G12 Fab2
Resolution: 3.79 Å
EM Method: Single-particle
Fitted PDBs: 6ozc
Q-score: 0.372
Seabright GE, Cottrell CA, van Gils MJ, D'addabbo A, Harvey DJ, Behrens AJ, Allen JD, Watanabe Y, Scaringi N, Polveroni TM, Maker A, Vasiljevic S, de Val N, Sanders RW, Ward AB, Crispin M
Structure (2020) 28 pp. 897- [ Pubmed: 32433992 DOI: doi:10.1016/j.str.2020.04.022 ]
- Bg505 sosip.664 with 2g12 fab2 (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2g12 fab light chain (23 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp160 (53 kDa, Protein from Human immunodeficiency virus 1)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- 2g12 fab heavy chain (23 kDa, Protein from Homo sapiens)
HIV-1 bNAb 1-18 in complex with BG505 SOSIP.664 and 10-1074
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6udj
Q-score: 0.632
Schommers P, Gruell H, Abernathy ME, Tran MK, Dingens AS, Gristick HB, Barnes CO, Schoofs T, Schlotz M, Vanshylla K, Kreer C, Weiland D, Holtick U, Scheid C, Valter MM, van Gils MJ, Sanders RW, Vehreschild JJ, Cornely OA, Lehmann C, Fatkenheuer G, Seaman MS, Bloom JD, Bjorkman PJ, Klein F
Cell (2020) 180 pp. 471- [ DOI: doi:10.1016/j.cell.2020.01.010 Pubmed: 32004464 ]
- 10-1074 fab light chain (23 kDa, Protein from Homo sapiens)
- 10-1074 fab heavy chain (25 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bg505 sosip.664 trimer (Complex from Human immunodeficiency virus 1)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- 10-1074 fab (Complex from Homo sapiens)
- 1-18 fab (Complex from Homo sapiens)
- 1-18 fab light chain (25 kDa, Protein from Homo sapiens)
- Complex of bnabs 1-18 and 10-1074 in complex with bg505 sosip.664 trimer (300 kDa, Complex)
- 1-18 fab heavy chain (53 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
- Water (18 Da, Ligand)
HIV-1 bNAb 1-55 in complex with modified BG505 SOSIP-based immunogen RC1 and 10-1074
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6udk
Q-score: 0.442
Schommers P, Gruell H, Abernathy ME, Tran MK, Dingens AS, Gristick HB, Barnes CO, Schoofs T, Schlotz M, Vanshylla K, Kreer C, Weiland D, Holtick U, Scheid C, Valter MM, van Gils MJ, Sanders RW, Vehreschild JJ, Cornely OA, Lehmann C, Fatkenheuer G, Seaman MS, Bloom JD, Bjorkman PJ, Klein F
Cell (2020) 180 pp. 471- [ DOI: doi:10.1016/j.cell.2020.01.010 Pubmed: 32004464 ]
- 10-1074 fab light chain (23 kDa, Protein from Homo sapiens)
- 10-1074 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Rc1 variant of hiv-1 env glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rc1 variant of hiv-1 bg505 sosip.664 (Complex from Human immunodeficiency virus 1)
- 1-55 fab (Complex from Homo sapiens)
- 10-1074 fab (Complex from Homo sapiens)
- Complex of three bnab 1-55 fabs and three 10-1074 fabs bound to rc1 variant of bg505 sosip.664 trimer (300 kDa, Complex)
- 1-55 fab light chain (25 kDa, Protein from Homo sapiens)
- Rc1 variant of hiv-1 env glycoprotein gp120 (54 kDa, Protein from Human immunodeficiency virus 1)
- 1-55 fab heavy chain (28 kDa, Protein from Homo sapiens)
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 6nc2
Q-score: 0.216
Yuan M, Cottrell CA, Ozorowski G, van Gils MJ, Kumar S, Wu NC, Sarkar A, Torres JL, de Val N, Copps J, Moore JP, Sanders RW, Ward AB, Wilson IA
Cell Host Microbe (2019) 25 pp. 873- [ DOI: doi:10.1016/j.chom.2019.04.011 Pubmed: 31194940 ]
- Amc011 v4.2 sosip gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Vrc34.01 (Complex from Homo sapiens)
- Monoclonal antibody acs202 fragment antigen binding heavy chain (27 kDa, Protein from Homo sapiens)
- Hiv-1 env amc011 v4.2 sosip gp120 (Complex from Human immunodeficiency virus 1)
- Amc011 v4.2 sosip gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Complex of amc011 v4.2 sosip trimer and acs202 fragment antigen binding (570 kDa, Complex)
- Hiv-1 env amc011 v4.2 sosip gp41 (Complex from Human immunodeficiency virus 1)
- Monoclonal antibody acs202 fragment antigen binding kappa chain (25 kDa, Protein from Homo sapiens)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6nc3
Q-score: 0.255
Yuan M, Cottrell CA, Ozorowski G, van Gils MJ, Kumar S, Wu NC, Sarkar A, Torres JL, de Val N, Copps J, Moore JP, Sanders RW, Ward AB, Wilson IA
Cell Host Microbe (2019) 25 pp. 873- [ DOI: doi:10.1016/j.chom.2019.04.011 Pubmed: 31194940 ]
- Hiv-1 env amc011 v4.2 sosip gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Vrc34.01 (Complex from Homo sapiens)
- Monoclonal antibody vrc34.01 fragment antigen binding heavy chain (23 kDa, Protein from Homo sapiens)
- Hiv-1 env amc011 v4.2 sosip gp120 (Complex from Human immunodeficiency virus 1)
- Hiv-1 env amc011 v4.2 sosip gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
- Complex of amc011 v4.2 sosip trimer and vrc34.01 fragment antigen binding (570 kDa, Complex)
- Monoclonal antibody vrc34.01 fragment antigen binding light chain (22 kDa, Protein from Homo sapiens)
- Hiv-1 env amc011 v4.2 sosip gp41 (Complex from Human immunodeficiency virus 1)