CryoEM structure of wheat 40S ribosomal subunit, head domain
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 8r57
Q-score: 0.58
Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS
Int J Mol Sci (2023) 24 [ Pubmed: 38139282 DOI: doi:10.3390/ijms242417453 ]
- 40s ribosomal protein s3 (25 kDa, Protein from Triticum aestivum)
- Putative ribosomal protein s18 (17 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit from triticum aestivum (common wheat) (Complex from Triticum aestivum)
- 40s ribosomal protein s25 (12 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein s12 (15 kDa, Protein from Triticum aestivum)
- Water (18 Da, Ligand)
- 40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
- Ribosomal protein rack1 subfamily. wd repeat g protein beta family (36 kDa, Protein from Triticum aestivum)
- Plectin/es10 n-terminal domain-containing protein (20 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s15 (17 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Ubiquitin-like domain-containing protein (17 kDa, Protein from Triticum aestivum)
- Ribosomal protein s20 (14 kDa, Protein from Triticum aestivum)
- Rna (458-mer) (584 kDa, RNA from Triticum aestivum)
- Small ribosomal subunit protein us7c (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s19 (17 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s28 (7 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s16 (16 kDa, Protein from Triticum aestivum)
3DFlex refinement of wheat 40S ribosomal subunit cryo-EM reconstruction
Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS
Int J Mol Sci (2023) 24 [ Pubmed: 38139282 DOI: doi:10.3390/ijms242417453 ]
CryoEM structure of wheat 40S ribosomal subunit, body domain
Resolution: 2.34 Å
EM Method: Single-particle
Fitted PDBs: 8r6f
Q-score: 0.6
Kravchenko OV, Baymukhametov TN, Afonina ZA, Vassilenko KS
Int J Mol Sci (2023) 24 [ Pubmed: 38139282 DOI: doi:10.3390/ijms242417453 ]
- 40s ribosomal protein s6 (28 kDa, Protein from Triticum aestivum)
- S5 drbm domain-containing protein (30 kDa, Protein from Triticum aestivum)
- 30s ribosomal protein s11, chloroplastic (16 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s7 (22 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s30 (6 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein es1 (30 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s23 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s24 (15 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s26 (15 kDa, Protein from Triticum aestivum)
- Potassium ion (39 Da, Ligand)
- Small ribosomal subunit protein us15 n-terminal domain-containing protein (17 kDa, Protein from Triticum aestivum)
- 30s ribosomal protein s4, chloroplastic (22 kDa, Protein from Triticum aestivum)
- Water (18 Da, Ligand)
- Rna (1177-mer) (584 kDa, RNA from Triticum aestivum)
- 40s ribosomal protein s17 (16 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit protein us2 (33 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s8 (25 kDa, Protein from Triticum aestivum)
- Small ribosomal subunit from triticum aestivum (common wheat) (Complex from Triticum aestivum)
- Small ribosomal subunit protein us17 n-terminal domain-containing protein (17 kDa, Protein from Triticum aestivum)
- Genome assembly, chromosome: ii (8 kDa, Protein from Triticum aestivum)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us8c (14 kDa, Protein from Triticum aestivum)
- Large ribosomal subunit protein el41z/el41y/el41x/el41w/el41v (3 kDa, Protein from Triticum aestivum)
- 40s ribosomal protein s4 (30 kDa, Protein from Triticum aestivum)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s27 (9 kDa, Protein from Triticum aestivum)
Chesnokov Y, Kamyshinsky R, Mozhaev A, Shtykova E, Vasiliev A, Orlov I, Dadinova L
Int J Mol Sci (2023) 24 [ Pubmed: 37239879 DOI: doi:10.3390/ijms24108534 ]
- Dps-dna assembly (220 kDa, Complex from Escherichia coli BL21(DE3))
Dps-DNA filament-like assembly
Chesnokov Y, Kamyshinsky R, Mozhaev A, Shtykova E, Vasiliev A, Orlov I, Dadinova L
Int J Mol Sci (2023) 24 [ Pubmed: 37239879 DOI: doi:10.3390/ijms24108534 ]
- Dps-dna assembly (220 kDa, Complex from Escherichia coli BL21(DE3))
21S ribosomal precursors induced by heat shock.
Giudice E, Georgeault S, Lavigne R, Pineau C, Trautwetter A, Ermel G, Blanco C, Gillet R
Int J Mol Sci (2023) 24 [ Pubmed: 36834906 DOI: doi:10.3390/ijms24043491 ]
Chesnokov Y, Mozhaev A, Kamyshinsky R, Gordienko A, Dadinova L
Int J Mol Sci (2022) 23 [ Pubmed: 35628121 DOI: doi:10.3390/ijms23105313 ]
- Dps control (224 kDa, Cellular component from Escherichia coli 'BL21-Gold(DE3)pLysS AG')
Dps nanocage with the "small circle" mineral core
Chesnokov Y, Mozhaev A, Kamyshinsky R, Gordienko A, Dadinova L
Int J Mol Sci (2022) 23 [ Pubmed: 35628121 DOI: doi:10.3390/ijms23105313 ]
- Dps control (224 kDa, Cellular component from Escherichia coli 'BL21-Gold(DE3)pLysS AG')
Dps nanocage with the "dumbbell" mineral core
Chesnokov Y, Mozhaev A, Kamyshinsky R, Gordienko A, Dadinova L
Int J Mol Sci (2022) 23 [ Pubmed: 35628121 DOI: doi:10.3390/ijms23105313 ]
- Dps control (224 kDa, Cellular component from Escherichia coli 'BL21-Gold(DE3)pLysS AG')
Dps nanocage with a medium mineral core
Chesnokov Y, Mozhaev A, Kamyshinsky R, Gordienko A, Dadinova L
Int J Mol Sci (2022) 23 [ Pubmed: 35628121 DOI: doi:10.3390/ijms23105313 ]
- Dps control (224 kDa, Cellular component from Escherichia coli 'BL21-Gold(DE3)pLysS AG')