J-shaped conformer of amyloid beta (1-40)
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 9iio
Q-score: 0.396
Burton-Smith RN, Yagi-Utsumi M, Yanaka S, Song C, Murata K, Kato K
Int J Mol Sci (2025) 26 [ DOI: doi:10.3390/ijms26031179 Pubmed: 39940945 ]
- Amyloid-beta protein 40 (4 kDa, Protein from Homo sapiens)
- J-type amyloid beta (1-40) (Complex from Homo sapiens)
Cryo-EM structure of chitin synthase
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8k52
Q-score: 0.456
Niu S, Qi L, Zhang X, He D, Li P, Wang H, Bi Y
Int J Mol Sci (2024) 25 [ Pubmed: 39519219 DOI: doi:10.3390/ijms252111667 ]
- Uridine-5'-diphosphate (404 Da, Ligand)
- Chitin synthase (104 kDa, Protein from Phytophthora sojae strain P6497)
- Manganese (ii) ion (54 Da, Ligand)
- A membrane-integrated glycosyltransferase that transfers glcnac from udp-glcnac to a growing chitin chain (103 MDa, Complex from Phytophthora sojae)
Cryo-EM structure of chitin synthase
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8z0o
Q-score: 0.486
Niu S, Qi L, Zhang X, He D, Li P, Wang H, Bi Y
Int J Mol Sci (2024) 25 [ Pubmed: 39519219 DOI: doi:10.3390/ijms252111667 ]
- Uridine-5'-diphosphate (404 Da, Ligand)
- Chitin synthase (104 kDa, Protein from Phytophthora sojae strain P6497)
- Manganese (ii) ion (54 Da, Ligand)
- A membrane-integrated glycosyltransferase that transfers glcnac from udp-glcnac to a growing chitin chain (103 MDa, Complex from Phytophthora sojae strain P6497)
Cryo-EM structure of human testis-specific Na+,K+-ATPase alpha4 in ouabain-bound form
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 8zyj
Q-score: 0.639
Abe K, McDermott J, Valia Madapally H, Marimuthu P, Gopalasingam CC, Gerle C, Shigematsu H, Khandelia H, Blanco G
Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms252212397 Pubmed: 39596464 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sodium/potassium-transporting atpase subunit alpha-4 (108 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- 2-{[(4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25r)-spirost-5-en-3-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-alpha-d-glucopyranoside (1 kDa, Ligand)
- Magnesium ion (24 Da, Ligand)
- Sodium/potassium-transporting atpase subunit beta-1 (35 kDa, Protein from Homo sapiens)
- Ouabain (584 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Alpha4-beta1 heterodimer (135 MDa, Complex from Homo sapiens)
Structure of urea-treated empty bacteriophage T5 connector complex
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 9imh
Q-score: 0.397
Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H
Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]
- Escherichia phage t5 (Virus from Escherichia phage T5)
- Tail tube terminator protein p142 (18 kDa, Protein from Escherichia phage T5)
Structure of the urea-treated empty bacteriophage T5 portal complex
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9imv
Q-score: 0.477
Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H
Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]
- Head completion protein (19 kDa, Protein from Escherichia phage T5)
- Escherichia phage t5 (Virus from Escherichia phage T5)
- Portal protein pb7 (45 kDa, Protein from Escherichia phage T5)
Structure of the bacteriophage T5 portal complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9ilp
Q-score: 0.52
Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H
Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]
- Head completion protein (19 kDa, Protein from Escherichia phage T5)
- Escherichia phage t5 (Virus from Escherichia phage T5)
- Portal protein pb7 (45 kDa, Protein from Escherichia phage T5)
Structure of the bacteriophage T5 capsid
Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H
Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]
- Major capsid protein (50 kDa, Protein from Escherichia phage T5)
- Escherichia phage t5 (Virus from Escherichia phage T5)
- Decoration protein (17 kDa, Protein from Escherichia phage T5)
Structure of the bacteriophage T5 connector complex
Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H
Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]
- Escherichia phage t5 (Virus from Escherichia phage T5)
- Tail tube terminator protein p142 (18 kDa, Protein from Escherichia phage T5)
Structure of bacteriophage T5 tail tube
Peng Y, Tang H, Xiao H, Chen W, Song J, Zheng J, Liu H
Int J Mol Sci (2024) 25 [ DOI: doi:10.3390/ijms25158479 Pubmed: 39126049 ]
- Escherichia phage t5 (Virus from Escherichia phage T5)
- Tail tube protein pb6 (50 kDa, Protein from Escherichia phage T5)