Apoferritin at 100 keV on Alpine detector with a side-entry cryoholder
Chan LM, Courteau BJ, Maker A, Wu M, Basanta B, Mehmood H, Bulkley D, Joyce D, Lee BC, Mick S, Czarnik C, Gulati S, Lander GC, Verba KA
J Struct Biol (2024) 216 pp. 108108-108108 [ DOI: doi:10.1016/j.jsb.2024.108108 Pubmed: 38944401 ]
- Heavy chain apoferritin from mouse (487 kDa, Complex from Mus musculus)
- Heavy chain apoferritin from mouse (Protein from Mus musculus)
Aldolase at 100 keV on the Alpine detector with a side-entry cryoholder
Resolution: 3.01 Å
EM Method: Helical reconstruction
Fitted PDBs: 8uxu
Q-score: 0.604
Aguirre-Sampieri S, Casanal A, Emsley P, Garza-Ramos G
J Struct Biol (2024) 216 pp. 108093-108093 [ DOI: doi:10.1016/j.jsb.2024.108093 Pubmed: 38615726 ]
SctV (SsaV) cytoplasmic domain
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7awa
Q-score: 0.449
Matthews-Palmer TRS, Gonzalez-Rodriguez N, Calcraft T, Lagercrantz S, Zachs T, Yu XJ, Grabe GJ, Holden DW, Nans A, Rosenthal PB, Rouse SL, Beeby M
J Struct Biol (2021) 213 pp. 107729-107729 [ DOI: doi:10.1016/j.jsb.2021.107729 Pubmed: 33774138 ]
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6zhx
Q-score: 0.625
Lehmann LC, Bacic L, Hewitt G, Brackmann K, Sabantsev A, Gaullier G, Pytharopoulou S, Degliesposti G, Okkenhaug H, Tan S, Costa A, Skehel JM, Boulton SJ, Deindl S
Cell Rep (2020) 33 pp. 108529-108529 [ DOI: doi:10.1016/j.celrep.2020.108529 Pubmed: 33357431 ]
- Crosslinked complex of alc1 regulatory linker and the nucleosome (206 kDa, Complex)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna (145-mer) widom 601 sequence (44 kDa, DNA from synthetic construct)
- Dna (145-mer) widom 601 sequence (44 kDa, DNA from synthetic construct)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Chromodomain-helicase-dna-binding protein 1-like (Complex from Homo sapiens)
- Histones (Complex from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Chromodomain-helicase-dna-binding protein 1-like (4 kDa, Protein from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (Complex from synthetic construct)
- Water (18 Da, Ligand)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6zhy
Q-score: 0.516
Lehmann LC, Bacic L, Hewitt G, Brackmann K, Sabantsev A, Gaullier G, Pytharopoulou S, Degliesposti G, Okkenhaug H, Tan S, Costa A, Skehel JM, Boulton SJ, Deindl S
Cell Rep (2020) 33 pp. 108529-108529 [ DOI: doi:10.1016/j.celrep.2020.108529 Pubmed: 33357431 ]
- Dna (110-mer) widom 601 sequence (44 kDa, DNA from synthetic construct)
- A hexasome (nucleosome lacking one of the two h2a-h2b dimers) with its acidic patch bound by the alc1 linker regulatory region. (170 kDa, Complex)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Chromodomain-helicase-dna-binding protein 1-like (Complex from Homo sapiens)
- Dna (110-mer) widom 601 sequence (44 kDa, DNA from synthetic construct)
- Histones (Complex from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Chromodomain-helicase-dna-binding protein 1-like (4 kDa, Protein from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (Complex from synthetic construct)
Cryo-EM structure of heavy chain mouse apoferritin
Resolution: 1.655 Å
EM Method: Single-particle
Fitted PDBs: 7kod
Q-score: 0.753
Sun M, Azumaya CM, Tse E, Bulkley DP, Harrington MB, Gilbert G, Frost A, Southworth D, Verba KA, Cheng Y, Agard DA
J Struct Biol (2021) 213 pp. 107745-107745 [ Pubmed: 33984504 DOI: doi:10.1016/j.jsb.2021.107745 ]
- Water (18 Da, Ligand)
- Heavy chain mouse apoferritin (Complex from Mus musculus)
- Ferritin heavy chain (21 kDa, Protein from Mus musculus)
CryoEM map and model of Nitrite Reductase at pH 6.2
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 6knf
Q-score: 0.582
Adachi N, Yamaguchi T, Moriya T, Kawasaki M, Koiwai K, Shinoda A, Yamada Y, Yumoto F, Kohzuma T, Senda T
J Struct Biol (2021) 213 pp. 107768-107768 [ Pubmed: 34217801 DOI: doi:10.1016/j.jsb.2021.107768 ]
- Nitrite reductase (110 kDa, Cellular component from Achromobacter cycloclastes)
- Copper (ii) ion (63 Da, Ligand)
- Copper-containing nitrite reductase (36 kDa, Protein from Achromobacter cycloclastes)
CryoEM map and model of Nitrite Reductase at pH 8.1
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 6kng
Q-score: 0.6
Adachi N, Yamaguchi T, Moriya T, Kawasaki M, Koiwai K, Shinoda A, Yamada Y, Yumoto F, Kohzuma T, Senda T
J Struct Biol (2021) 213 pp. 107768-107768 [ Pubmed: 34217801 DOI: doi:10.1016/j.jsb.2021.107768 ]
- Nitrite reductase (110 kDa, Cellular component from Achromobacter cycloclastes)
- Copper (ii) ion (63 Da, Ligand)
- Copper-containing nitrite reductase (36 kDa, Protein from Achromobacter cycloclastes)
