Cryo-EM structure of LPA1-Gi complex with LPA
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 9izf
Q-score: 0.487
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ Pubmed: 39725093 DOI: doi:10.1016/j.jsb.2024.108164 ]
- Scfv16 (26 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- Multiprotein complex (Complex from Homo sapiens)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
Cryo-EM structure of LPA1-Gq complex with LPA
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9izg
Q-score: 0.557
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ Pubmed: 39725093 DOI: doi:10.1016/j.jsb.2024.108164 ]
- Scfv16 (26 kDa, Protein from synthetic construct)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- Multiprotein complex (Complex from Homo sapiens)
- Gs-mini-gq chimera (28 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
Cryo-EM structure of LPA1-G13 complex with LPA
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9izh
Q-score: 0.553
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ Pubmed: 39725093 DOI: doi:10.1016/j.jsb.2024.108164 ]
- Scfv16 (26 kDa, Protein from synthetic construct)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- G protein subunit 13 (gi2-mini-g13 chimera) (26 kDa, Protein from Homo sapiens)
- Multiprotein complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
Aquaporin Z with ALFA tag and bound to nanobody
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 8uy6
Q-score: 0.68
Stover L, Bahramimoghaddam H, Wang L, Schrecke S, Yadav GP, Zhou M, Laganowsky A
J Struct Biol X (2024) 9 pp. 100097-100097 [ Pubmed: 38361954 DOI: doi:10.1016/j.yjsbx.2024.100097 ]
- Aquaporin z with alfa tag bound to nanobody (161 kDa, Complex)
- Anti-alfa nanobody (13 kDa, Protein from Vicugna pacos)
- Nanobody (Complex from Vicugna pacos)
- Aquaporin z with alfa tag (Complex from Escherichia coli)
- Cardiolipin (1 kDa, Ligand)
- Aquaporin z (26 kDa, Protein from Escherichia coli)
MicroED structure of bovine liver catalase with missing cone solved by suspended drop
Resolution: 4.0 Å
EM Method: Electron Crystallography
Fitted PDBs: 9bdj
Q-score: 0.483
Gillman C, Bu G, Danelius E, Hattne J, Nannenga BL, Gonen T
J Struct Biol X (2024) 9 pp. 100102-100102 [ DOI: doi:10.1016/j.yjsbx.2024.100102 Pubmed: 38962493 ]
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Bovine liver catalase (Complex from Bos taurus)
- Catalase (59 kDa, Protein from Bos taurus)
- Protoporphyrin ix containing fe (616 Da, Ligand)
Cryo-EM reconstruction of Staphylococcus aureus oleate hydratase (OhyA) dimer of dimers
Oldham ML, Zuhaib Qayyum M, Kalathur RC, Rock CO, Radka CD
J Struct Biol (2024) 216 pp. 108116-108116 [ Pubmed: 39151742 DOI: doi:10.1016/j.jsb.2024.108116 ]
- Oleate hydratase (69 kDa, Protein from Staphylococcus aureus)
- Dimer of dimers of ohya (278 kDa, Complex from Staphylococcus aureus)
Oldham ML, Zuhaib Qayyum M, Kalathur RC, Rock CO, Radka CD
J Struct Biol (2024) 216 pp. 108116-108116 [ Pubmed: 39151742 DOI: doi:10.1016/j.jsb.2024.108116 ]
- Assembly of dimers of ohya bound to a liposome (977 kDa, Complex from Staphylococcus aureus)
- Oleate hydratase (69 kDa, Protein from Staphylococcus aureus)
MicroED structure of the C11 cysteine protease clostripain
Ruma YN, Bu G, Hattne J, Gonen T
J Struct Biol X (2024) 10 pp. 100107-100107 [ DOI: doi:10.1016/j.yjsbx.2024.100107 Pubmed: 39100863 ]
- Clostripain (59 kDa, Complex from Hathewaya histolytica)
- Sodium ion (22 Da, Ligand)
- Water (18 Da, Ligand)
- Clostripain (59 kDa, Protein from Hathewaya histolytica)
Cryo-EM structure of LKB1-STRADalpha-MO25alpha heterocomplex
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 8vsu
Q-score: 0.575
Chan LM, Courteau BJ, Maker A, Wu M, Basanta B, Mehmood H, Bulkley D, Joyce D, Lee BC, Mick S, Czarnik C, Gulati S, Lander GC, Verba KA
J Struct Biol (2024) 216 pp. 108108-108108 [ DOI: doi:10.1016/j.jsb.2024.108108 Pubmed: 38944401 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Serine/threonine-protein kinase stk11 (50 kDa, Protein from Homo sapiens)
- Heterotrimeric complex of serine/threonine kinase lkb1 with psuedokinase strada and scaffolding mo25a (140 kDa, Complex from Homo sapiens)
- Calcium-binding protein 39 (41 kDa, Protein from Homo sapiens)
- Isoform 3 of ste20-related kinase adapter protein alpha (47 kDa, Protein from Homo sapiens)
Apoferritin at 100 keV on Alpine detector with a side-entry cryoholder
Chan LM, Courteau BJ, Maker A, Wu M, Basanta B, Mehmood H, Bulkley D, Joyce D, Lee BC, Mick S, Czarnik C, Gulati S, Lander GC, Verba KA
J Struct Biol (2024) 216 pp. 108108-108108 [ DOI: doi:10.1016/j.jsb.2024.108108 Pubmed: 38944401 ]
- Heavy chain apoferritin from mouse (487 kDa, Complex from Mus musculus)
- Heavy chain apoferritin from mouse (Protein from Mus musculus)