Cryo-EM structure of LKB1-STRADalpha-MO25alpha heterocomplex
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 8vsu
Q-score: 0.575
Chan LM, Courteau BJ, Maker A, Wu M, Basanta B, Mehmood H, Bulkley D, Joyce D, Lee BC, Mick S, Czarnik C, Gulati S, Lander GC, Verba KA
J Struct Biol (2024) 216 pp. 108108-108108 [ DOI: doi:10.1016/j.jsb.2024.108108 Pubmed: 38944401 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Serine/threonine-protein kinase stk11 (50 kDa, Protein from Homo sapiens)
- Heterotrimeric complex of serine/threonine kinase lkb1 with psuedokinase strada and scaffolding mo25a (140 kDa, Complex from Homo sapiens)
- Calcium-binding protein 39 (41 kDa, Protein from Homo sapiens)
- Isoform 3 of ste20-related kinase adapter protein alpha (47 kDa, Protein from Homo sapiens)
Apoferritin at 100 keV on Alpine detector with a side-entry cryoholder
Chan LM, Courteau BJ, Maker A, Wu M, Basanta B, Mehmood H, Bulkley D, Joyce D, Lee BC, Mick S, Czarnik C, Gulati S, Lander GC, Verba KA
J Struct Biol (2024) 216 pp. 108108-108108 [ DOI: doi:10.1016/j.jsb.2024.108108 Pubmed: 38944401 ]
- Heavy chain apoferritin from mouse (487 kDa, Complex from Mus musculus)
- Heavy chain apoferritin from mouse (Protein from Mus musculus)
Aldolase at 100 keV on the Alpine detector with a side-entry cryoholder
Cryogenic electron microscopy structure of human serum albumin in complex with teniposide
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8vac
Q-score: 0.463
Catalano C, Lucier KW, To D, Senko S, Tran NL, Farwell AC, Silva SM, Dip PV, Poweleit N, Scapin G
J Struct Biol (2024) 216 pp. 108105-108105 [ Pubmed: 38852682 DOI: doi:10.1016/j.jsb.2024.108105 ]
- Serum albumin (66 kDa, Protein from Homo sapiens)
- (5s,5ar,8ar,9r)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-o-(thiophen-2-ylmethylidene)-beta-d-glucopyranoside (656 Da, Ligand)
- Human serum albumin with teniposide (Complex from Homo sapiens)
Cryogenic electron microscopy structure of human serum albumin in complex with salicylic acid
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8vae
Q-score: 0.407
Catalano C, Lucier KW, To D, Senko S, Tran NL, Farwell AC, Silva SM, Dip PV, Poweleit N, Scapin G
J Struct Biol (2024) 216 pp. 108105-108105 [ Pubmed: 38852682 DOI: doi:10.1016/j.jsb.2024.108105 ]
- Serum albumin (66 kDa, Protein from Homo sapiens)
- Human serum albumin in complex with salicyl acid (Complex from Homo sapiens)
- 2-hydroxybenzoic acid (138 Da, Ligand)
Cryogenic electron microscopy structure of apo human serum albumin
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8vaf
Q-score: 0.464
Catalano C, Lucier KW, To D, Senko S, Tran NL, Farwell AC, Silva SM, Dip PV, Poweleit N, Scapin G
J Struct Biol (2024) 216 pp. 108105-108105 [ Pubmed: 38852682 DOI: doi:10.1016/j.jsb.2024.108105 ]
- Serum albumin (66 kDa, Protein from Homo sapiens)
- Apo human serum albumin (Complex from Homo sapiens)
Cryo-EM structure of heavy chain mouse apoferritin
Resolution: 1.655 Å
EM Method: Single-particle
Fitted PDBs: 7kod
Q-score: 0.753
Sun M, Azumaya CM, Tse E, Bulkley DP, Harrington MB, Gilbert G, Frost A, Southworth D, Verba KA, Cheng Y, Agard DA
J Struct Biol (2021) 213 pp. 107745-107745 [ Pubmed: 33984504 DOI: doi:10.1016/j.jsb.2021.107745 ]
- Water (18 Da, Ligand)
- Heavy chain mouse apoferritin (Complex from Mus musculus)
- Ferritin heavy chain (21 kDa, Protein from Mus musculus)
Resolution: 7.8 Å
EM Method: Single-particle
Fitted PDBs: 6pik
Q-score: 0.068
Yang M, Chen YS, Ichikawa M, Calles-Garcia D, Basu K, Fakih R, Bui KH, Gehring K
J Struct Biol (2019) 208 pp. 43-50 [ DOI: doi:10.1016/j.jsb.2019.07.009 Pubmed: 31344437 ]
- Udp-4-amino-4-deoxy-l-arabinose formyltransferase (40 kDa, Protein from Escherichia coli DH5[alpha])
- Arna (440 kDa, Complex from Escherichia coli DH5[alpha])
- Bifunctional polymyxin resistance protein arna (32 kDa, Protein from Escherichia coli DH5[alpha])
RNA polymerase II elongation complex arrested at a CPD lesion
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6o6c
Q-score: 0.435
Lahiri I, Xu J, Han BG, Oh J, Wang D, DiMaio F, Leschziner AE
J Struct Biol (2019) 207 pp. 270-278 [ Pubmed: 31200019 DOI: doi:10.1016/j.jsb.2019.06.004 ]
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Dna (5'-d(p*gp*gp*ap*gp*ap*ap*gp*gp*ap*gp*cp*ap*gp*ap*gp*c)-3') (5 kDa, DNA from Saccharomyces cerevisiae)
- Dna (27-mer) (8 kDa, DNA from Saccharomyces cerevisiae)
- Rna (5'-r(p*ap*up*cp*gp*ap*gp*ap*gp*g)-3') (2 kDa, RNA from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase ii subunit rpb3 (35 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase ii elongation complex stalled at a cpd lesion (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb2 (138 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb1 (191 kDa, Protein from Saccharomyces cerevisiae)
Thermus thermophilus V/A-ATPase bound to VH dAbs
Resolution: 8.7 Å
EM Method: Single-particle
Fitted PDBs: 5tsj
Q-score: 0.176
Davies RB, Smits C, Wong AS, Stock D, Christie M, Sandin S, Stewart AG
J Struct Biol (2017) 197 pp. 350-353 [ Pubmed: 28115258 DOI: doi:10.1016/j.jsb.2017.01.002 ]
- V-type atp synthase subunit c (35 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Thermus thermophilus v/a-atpase bound to vh dabs (Complex from Homo sapiens)
- Archaeal/vacuolar-type h+-atpase subunit i (72 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Human heavy chain domain antibody (16 kDa, Protein from Homo sapiens)
- V-type atpase subunit g (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- V-type atp synthase subunit f (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- V-type atp synthase beta chain (50 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Vacuolar type atp synthase subunit (9 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- V-type atp synthase subunit d (23 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))