Cryo-EM structure of LPA1-Gi complex with LPA
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 9izf
Q-score: 0.487
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ Pubmed: 39725093 DOI: doi:10.1016/j.jsb.2024.108164 ]
- Scfv16 (26 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- Multiprotein complex (Complex from Homo sapiens)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
Cryo-EM structure of LPA1-Gq complex with LPA
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9izg
Q-score: 0.557
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ Pubmed: 39725093 DOI: doi:10.1016/j.jsb.2024.108164 ]
- Scfv16 (26 kDa, Protein from synthetic construct)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- Multiprotein complex (Complex from Homo sapiens)
- Gs-mini-gq chimera (28 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
Cryo-EM structure of LPA1-G13 complex with LPA
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9izh
Q-score: 0.553
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ Pubmed: 39725093 DOI: doi:10.1016/j.jsb.2024.108164 ]
- Scfv16 (26 kDa, Protein from synthetic construct)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- G protein subunit 13 (gi2-mini-g13 chimera) (26 kDa, Protein from Homo sapiens)
- Multiprotein complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
AP2 bound to MSP1 nanodisc with Tgn38 cargo peptide
S Cannon K, Sarsam RD, Tedamrongwanish T, Zhang K, Baker RW
J Struct Biol (2023) 215 pp. 107989-107989 [ Pubmed: 37364761 DOI: doi:10.1016/j.jsb.2023.107989 ]
- Ap-2 complex subunit mu (Protein from Mus musculus)
- Ap-2 complex subunit beta (Protein from Mus musculus)
- Ap-2 complex (Complex from Mus musculus)
- Tgn38 cargo peptide (Complex)
- Ap2 bound to msp1 nanodisc with tgn38 cargo peptide (200 kDa, Complex)
- Ap-2 complex subunit sigma (Protein from Mus musculus)
- Ap-2 complex subunit alpha-2 (Protein from Mus musculus)
- Tgn38 tyrosine cargo peptide (Protein from Rattus norvegicus)
AP2 bound to MSP1E3D1 nanodisc with Tgn38 cargo peptide
S Cannon K, Sarsam RD, Tedamrongwanish T, Zhang K, Baker RW
J Struct Biol (2023) 215 pp. 107989-107989 [ Pubmed: 37364761 DOI: doi:10.1016/j.jsb.2023.107989 ]
- Ap2 bound to msp1e3d1 nanodisc and tgn38 cargo peptide (200 kDa, Complex)
- Ap-2 complex subunit mu (Protein from Mus musculus)
- Tgn38 (Protein from Rattus norvegicus)
- Ap-2 complex subunit beta (Protein from Mus musculus)
- Ap-2 complex (Complex from Mus musculus)
- Tgn38 cargo peptide (Complex)
- Ap-2 complex subunit sigma (Protein from Mus musculus)
- Ap-2 complex subunit alpha-2 (Protein from Mus musculus)
S Cannon K, Sarsam RD, Tedamrongwanish T, Zhang K, Baker RW
J Struct Biol (2023) 215 pp. 107989-107989 [ Pubmed: 37364761 DOI: doi:10.1016/j.jsb.2023.107989 ]
- Ap-2 complex subunit mu (Protein from Mus musculus)
- Ap-2 complex subunit beta (Protein from Mus musculus)
- Ap2 bound to msp2n2 nanodisc (203 kDa, Complex from Mus musculus)
- Msp1 (Protein from Homo sapiens)
- Ap-2 complex subunit sigma (Protein from Mus musculus)
- Ap-2 complex subunit alpha-2 (Protein from Mus musculus)
Structure of AP2 bound to MSP1E3D1 nanodisc
S Cannon K, Sarsam RD, Tedamrongwanish T, Zhang K, Baker RW
J Struct Biol (2023) 215 pp. 107989-107989 [ Pubmed: 37364761 DOI: doi:10.1016/j.jsb.2023.107989 ]
- Ap-2 complex subunit mu (Protein from Mus musculus)
- Ap-2 complex subunit beta (Protein from Mus musculus)
- Ap2 bound to msp1e3d1 nanodisc (203 kDa, Complex from Mus musculus)
- Msp2n2 (Protein from Homo sapiens)
- Ap-2 complex subunit sigma (Protein from Mus musculus)
- Ap-2 complex subunit alpha-2 (Protein from Mus musculus)
Structure of AP2 bound to MSP2N2 nanodisc
S Cannon K, Sarsam RD, Tedamrongwanish T, Zhang K, Baker RW
J Struct Biol (2023) 215 pp. 107989-107989 [ Pubmed: 37364761 DOI: doi:10.1016/j.jsb.2023.107989 ]
- Ap-2 complex subunit mu (Protein from Mus musculus)
- Ap-2 complex subunit beta (Protein from Mus musculus)
- Ap2 bound to msp2n2 nanodisc (203 kDa, Complex from Mus musculus)
- Msp1e3d1 (Protein from Homo sapiens)
- Ap-2 complex subunit sigma (Protein from Mus musculus)
- Ap-2 complex subunit alpha-2 (Protein from Mus musculus)
AP2 bound to MSP2N2 nanodisc with Tgn38 cargo peptide; composite map
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8t1o
Q-score: 0.468
S Cannon K, Sarsam RD, Tedamrongwanish T, Zhang K, Baker RW
J Struct Biol (2023) 215 pp. 107989-107989 [ Pubmed: 37364761 DOI: doi:10.1016/j.jsb.2023.107989 ]
- [(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
- Ap-2 complex subunit sigma (17 kDa, Protein from Mus musculus)
- Trans-golgi network integral membrane protein tgn38 (1 kDa, Protein from Rattus norvegicus)
- Ap-2 complex subunit alpha-2 (70 kDa, Protein from Mus musculus)
- Ap-2 complex subunit mu (49 kDa, Protein from Mus musculus)
- Ap-2 complex subunit beta (66 kDa, Protein from Mus musculus)
- Ap2 bound to msp2n2 nanodisc with tgn38 cargo peptide (200 kDa, Complex from Mus musculus)
Cryo-EM structure of hAQP2 in DDM
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8gcl
Q-score: 0.56
Kamegawa A, Suzuki S, Suzuki H, Nishikawa K, Numoto N, Fujiyoshi Y
J Struct Biol (2023) 215 pp. 107984-107984 [ DOI: doi:10.1016/j.jsb.2023.107984 Pubmed: 37315821 ]
- Aquaporin-2 (28 kDa, Protein from Homo sapiens)
- Tetrameter of haqp2 (Complex from Homo sapiens)