Cryo-EM structure of LPA1-Gi complex with LPA
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 9izf
Q-score: 0.487
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ Pubmed: 39725093 DOI: doi:10.1016/j.jsb.2024.108164 ]
- Scfv16 (26 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- Multiprotein complex (Complex from Homo sapiens)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
Cryo-EM structure of LPA1-Gq complex with LPA
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9izg
Q-score: 0.557
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ Pubmed: 39725093 DOI: doi:10.1016/j.jsb.2024.108164 ]
- Scfv16 (26 kDa, Protein from synthetic construct)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- Multiprotein complex (Complex from Homo sapiens)
- Gs-mini-gq chimera (28 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
Cryo-EM structure of LPA1-G13 complex with LPA
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9izh
Q-score: 0.553
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ Pubmed: 39725093 DOI: doi:10.1016/j.jsb.2024.108164 ]
- Scfv16 (26 kDa, Protein from synthetic construct)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- G protein subunit 13 (gi2-mini-g13 chimera) (26 kDa, Protein from Homo sapiens)
- Multiprotein complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
Cryo-EM structure of hAQP2 in DDM
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8gcl
Q-score: 0.56
Kamegawa A, Suzuki S, Suzuki H, Nishikawa K, Numoto N, Fujiyoshi Y
J Struct Biol (2023) 215 pp. 107984-107984 [ DOI: doi:10.1016/j.jsb.2023.107984 Pubmed: 37315821 ]
- Aquaporin-2 (28 kDa, Protein from Homo sapiens)
- Tetrameter of haqp2 (Complex from Homo sapiens)
2.9-angstrom cryo-EM structure of Ecoli malate synthase G
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7yqm
Q-score: 0.548
Cryo-EM structure of a eukaryotic ZnT8 in the presence of zinc
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 7y5g
Q-score: 0.438
Zhang S, Fu C, Luo Y, Xie Q, Xu T, Sun Z, Su Z, Zhou X
J Struct Biol (2022) 215 pp. 107926-107926 [ Pubmed: 36464198 DOI: doi:10.1016/j.jsb.2022.107926 ]
- Zinc ion (65 Da, Ligand)
- Zinc transporter 8 (41 kDa, Protein from Xenopus tropicalis)
- Xtznt8 dimer complexed with zinc (Complex from Xenopus tropicalis)
Cryo-EM structure of a eukaryotic ZnT8 at a low pH
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 7y5h
Q-score: 0.442
Zhang S, Fu C, Luo Y, Xie Q, Xu T, Sun Z, Su Z, Zhou X
J Struct Biol (2022) 215 pp. 107926-107926 [ Pubmed: 36464198 DOI: doi:10.1016/j.jsb.2022.107926 ]
- Zinc transporter 8 (41 kDa, Protein from Xenopus tropicalis)
- Zinc ion (65 Da, Ligand)
- Xtznt8 dimer complexed with zinc and proton (Complex from Xenopus tropicalis)
cryo-EM structure of AMP-PNP bound human ABCB7
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7vgf
Q-score: 0.412
J Struct Biol (2022) 214 pp. 107832- [ DOI: doi:10.1016/j.jsb.2022.107832 ]
- Magnesium ion (24 Da, Ligand)
- Iron-sulfur clusters transporter abcb7, mitochondrial (76 kDa, Protein from Homo sapiens)
- Human abcb7 (150 MDa, Complex from Homo sapiens)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
Cryo-EM structure of heavy chain mouse apoferritin
Resolution: 1.655 Å
EM Method: Single-particle
Fitted PDBs: 7kod
Q-score: 0.753
Sun M, Azumaya CM, Tse E, Bulkley DP, Harrington MB, Gilbert G, Frost A, Southworth D, Verba KA, Cheng Y, Agard DA
J Struct Biol (2021) 213 pp. 107745-107745 [ Pubmed: 33984504 DOI: doi:10.1016/j.jsb.2021.107745 ]
- Water (18 Da, Ligand)
- Heavy chain mouse apoferritin (Complex from Mus musculus)
- Ferritin heavy chain (21 kDa, Protein from Mus musculus)
CryoEM map and model of Nitrite Reductase at pH 6.2
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 6knf
Q-score: 0.582
Adachi N, Yamaguchi T, Moriya T, Kawasaki M, Koiwai K, Shinoda A, Yamada Y, Yumoto F, Kohzuma T, Senda T
J Struct Biol (2021) 213 pp. 107768-107768 [ Pubmed: 34217801 DOI: doi:10.1016/j.jsb.2021.107768 ]
- Nitrite reductase (110 kDa, Cellular component from Achromobacter cycloclastes)
- Copper (ii) ion (63 Da, Ligand)
- Copper-containing nitrite reductase (36 kDa, Protein from Achromobacter cycloclastes)