structure of the GLMP/MFSD1 complex
Jungnickel KEJ, Guelle O, Iguchi M, Dong W, Kotov V, Gabriel F, Debacker C, Dairou J, McCort-Tranchepain I, Laqtom NN, Chan SH, Ejima A, Sato K, Massa Lopez D, Saftig P, Mehdipour AR, Abu-Remaileh M, Gasnier B, Low C, Damme M
Nat Cell Biol (2024) 26 pp. 1047-1061 [ Pubmed: 38839979 DOI: doi:10.1038/s41556-024-01436-5 ]
- Glmp-mfsd1 (Complex from Mus musculus)
Resolution: 4.08 Å
EM Method: Single-particle
Fitted PDBs: 8r8q
Q-score: 0.411
Jungnickel KEJ, Guelle O, Iguchi M, Dong W, Kotov V, Gabriel F, Debacker C, Dairou J, McCort-Tranchepain I, Laqtom NN, Chan SH, Ejima A, Sato K, Massa Lopez D, Saftig P, Mehdipour AR, Abu-Remaileh M, Gasnier B, Low C, Damme M
Nat Cell Biol (2024) 26 pp. 1047-1061 [ Pubmed: 38839979 DOI: doi:10.1038/s41556-024-01436-5 ]
- Glycosylated lysosomal membrane protein (43 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Major facilitator superfamily domain-containing protein 1 (55 kDa, Protein from Mus musculus)
- Glmp-mfsd1 (Complex from Mus musculus)
Legionella effector protein SidI
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8jhu
Q-score: 0.526
Subramanian A, Wang L, Moss T, Voorhies M, Sangwan S, Stevenson E, Pulido EH, Kwok S, Chalkley RJ, Li KH, Krogan NJ, Swaney DL, Burlingame AL, Floor SN, Sil A, Walter P, Mukherjee S
Nat Cell Biol (2023) 25 pp. 1600-1615 [ DOI: doi:10.1038/s41556-023-01248-z Pubmed: 37857833 ]
- Legionella pneumophila effector protein sidi (134 kDa, Protein from Legionella pneumophila subsp. pneumophila str. Philadelphia 1)
- Legionella pneumophila effector proein sidi (100 kDa, Complex from Legionella pneumophila)
- Legionella pneumophila effector protein sidi (Complex from Legionella pneumophila)
Complex of AMPPNP-Kif7 and Gli2 Zinc-Finger domain bound to microtubules
Resolution: 3.89 Å
EM Method: Helical reconstruction
Fitted PDBs: 7rx0
Q-score: 0.338
Haque F, Freniere C, Ye Q, Mani N, Wilson-Kubalek EM, Ku PI, Milligan RA, Subramanian R
Nat Cell Biol (2022) 24 pp. 1088-1098 [ DOI: doi:10.1038/s41556-022-00935-7 Pubmed: 35725768 ]
- Microtubule-bound complex of kif7 and gli2 zinc finger domain (Complex)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Kinesin kif7 (Complex from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin alpha-1a chain (50 kDa, Protein from Sus scrofa)
- Kinesin-like protein kif7 (59 kDa, Protein from Homo sapiens)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Zinc finger protein gli2 (7 kDa, Protein from Homo sapiens)
- Zinc-finger protein gli2 (Complex from Homo sapiens)
- Microtubules (Complex from Sus scrofa)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 7pfp
Q-score: 0.182
Stsiapanava A, Xu C, Nishio S, Han L, Yamakawa N, Carroni M, Tunyasuvunakool K, Jumper J, de Sanctis D, Wu B, Jovine L
Nat Struct Mol Biol (2022) 29 pp. 190-193 [ Pubmed: 35273390 DOI: doi:10.1038/s41594-022-00729-3 ]
- Uromodulin (umod)/tamm-horsfall protein (thp) (Complex from Homo sapiens)
- Uromodulin (69 kDa, Protein from Homo sapiens)
14pf microtubule decorated with EML1-GFP
Jijumon AS, Bodakuntla S, Genova M, Bangera M, Sackett V, Besse L, Maksut F, Henriot V, Magiera MM, Sirajuddin M, Janke C
Nat Cell Biol (2022) 24 pp. 253-267 [ DOI: doi:10.1038/s41556-021-00825-4 Pubmed: 35102268 ]
Cryo-EM structure of the Lin28B nucleosome core particle
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7nl0
Q-score: 0.519
Roberts GA, Ozkan B, Gachulincova I, O'Dwyer MR, Hall-Ponsele E, Saxena M, Robinson PJ, Soufi A
Nat Cell Biol (2021) 23 pp. 834-845 [ Pubmed: 34354236 DOI: doi:10.1038/s41556-021-00727-5 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.1 (Complex from Homo sapiens)
- Histone h2a type 1-b/e (Complex from Homo sapiens)
- Histone h4 (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (Complex from Homo sapiens)
- Dna (131-mer) (50 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (Complex from Homo sapiens)
- Lin28b nucleosome core particle (209 kDa, Complex)
- Dna (131-mer) (49 kDa, DNA from Homo sapiens)
Cryo-EM of native human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament
Resolution: 3.35 Å
EM Method: Helical reconstruction
Fitted PDBs: 6tqk
Q-score: 0.391
Stsiapanava A, Xu C, Brunati M, Zamora-Caballero S, Schaeffer C, Bokhove M, Han L, Hebert H, Carroni M, Yasumasu S, Rampoldi L, Wu B, Jovine L
EMBO J (2020) 39 pp. e106807-e106807 [ DOI: doi:10.15252/embj.2020106807 Pubmed: 33196145 ]
- Uromodulin (61 kDa, Protein from Homo sapiens)
- Uromodulin (umod)/tamm-horsfall protein (thp) (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM of elastase-treated human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament
Resolution: 3.96 Å
EM Method: Helical reconstruction
Fitted PDBs: 6tql
Q-score: 0.289
Stsiapanava A, Xu C, Brunati M, Zamora-Caballero S, Schaeffer C, Bokhove M, Han L, Hebert H, Carroni M, Yasumasu S, Rampoldi L, Wu B, Jovine L
EMBO J (2020) 39 pp. e106807-e106807 [ DOI: doi:10.15252/embj.2020106807 Pubmed: 33196145 ]
- Uromodulin (umod)/tamm-horsfall protein (thp) (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Uromodulin (33 kDa, Protein from Homo sapiens)
Jordan MA, Diener DR, Stepanek L, Pigino G
Nat Cell Biol (2018) 20 pp. 1250-1255 [ DOI: doi:10.1038/s41556-018-0213-1 Pubmed: 30323187 ]