IF(apo/as isolated) conformation of CydDC mutant (H85A.C) in AMP-PNP(CydD) bound state (Dataset-17)
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Cydc (Protein from Escherichia coli K-12)
- Cydd (Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Cydc (Protein from Escherichia coli K-12)
- Cydd (Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(apo/as isolated) conformation of CydDC (Dataset-1)
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 7zd5
Q-score: 0.558
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(heme/confined) conformation of CydDC (Dataset-1)
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Cydc (Protein from Escherichia coli K-12)
- Cydd (Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(apo/asym) conformation of CydDC in ADP+Pi(CydC)/ATP(CydD) bound state (Dataset-2)
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 7zda
Q-score: 0.534
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Phosphite ion (78 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(heme/bound) conformation of CydDC in ADP+Pi(CydC)/ATP(CydD) bound state (Dataset-2)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7zdb
Q-score: 0.526
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Phosphite ion (78 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Heme b/c (618 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(apo/as isolated) conformation of CydDC in ADP(CydD) bound state (Dataset-3)
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Cydc (Protein from Escherichia coli K-12)
- Cydd (Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(heme/confined) conformation of CydDC in ADP(CydD) bound state (Dataset-3)
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7zdc
Q-score: 0.574
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Heme b/c (618 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(apo/as isolated) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-4)
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 7zde
Q-score: 0.561
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(heme/confined) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-4)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 7zdf
Q-score: 0.589
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ DOI: doi:10.1038/s41589-023-01314-5 Pubmed: 37095238 ]
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- {3,3'-[(9s)-8,13-diethenyl-3,7,12,17-tetramethyl-9,10-dihydroporphyrin-2,18-diyl-kappa~4~n~21~,n~22~,n~23~,n~24~]dipropanoato(2-)}iron (618 Da, Ligand)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)