IF(apo/as isolated) conformation of CydDC mutant (H85A.C) in AMP-PNP(CydD) bound state (Dataset-17)
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Cydc (Protein from Escherichia coli K-12)
- Cydd (Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Cydc (Protein from Escherichia coli K-12)
- Cydd (Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(apo/as isolated) conformation of CydDC (Dataset-1)
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 7zd5
Q-score: 0.558
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
IF(heme/confined) conformation of CydDC (Dataset-1)
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Cydc (Protein from Escherichia coli K-12)
- Cydd (Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(apo/asym) conformation of CydDC in ADP+Pi(CydC)/ATP(CydD) bound state (Dataset-2)
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 7zda
Q-score: 0.534
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Phosphite ion (78 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(heme/bound) conformation of CydDC in ADP+Pi(CydC)/ATP(CydD) bound state (Dataset-2)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7zdb
Q-score: 0.526
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Phosphite ion (78 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Heme b/c (618 Da, Ligand)
IF(apo/as isolated) conformation of CydDC in ADP(CydD) bound state (Dataset-3)
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Cydc (Protein from Escherichia coli K-12)
- Cydd (Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
IF(heme/confined) conformation of CydDC in ADP(CydD) bound state (Dataset-3)
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 7zdc
Q-score: 0.574
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Heme b/c (618 Da, Ligand)
IF(apo/as isolated) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-4)
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 7zde
Q-score: 0.561
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
IF(heme/confined) conformation of CydDC in AMP-PNP(CydD) bound state (Dataset-4)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 7zdf
Q-score: 0.589
Wu D, Mehdipour AR, Finke F, Goojani HG, Groh RR, Grund TN, Reichhart TMB, Zimmermann R, Welsch S, Bald D, Shepherd M, Hummer G, Safarian S
Nat Chem Biol (2023) 19 pp. 992-1003 [ Pubmed: 37095238 DOI: doi:10.1038/s41589-023-01314-5 ]
- {3,3'-[(9s)-8,13-diethenyl-3,7,12,17-tetramethyl-9,10-dihydroporphyrin-2,18-diyl-kappa~4~n~21~,n~22~,n~23~,n~24~]dipropanoato(2-)}iron (618 Da, Ligand)
- Atp-binding/permease protein cydc (62 kDa, Protein from Escherichia coli K-12)
- Atp-binding/permease protein cydd (65 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Cyddc heterodimer (130 kDa, Complex from Escherichia coli)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)