CrtSPARTA Octamer bound with guide-target
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8jay
Q-score: 0.347
Guo L, Huang P, Li Z, Shin YC, Yan P, Lu M, Chen M, Xiao Y
Nat Chem Biol (2024) 20 pp. 512-520 [ DOI: doi:10.1038/s41589-023-01478-0 Pubmed: 37932527 ]
- Piwi domain-containing protein (58 kDa, Protein from Thermoflavifilum thermophilum)
- Short ago complexed with tir-apaz (Complex from Thermoflavifilum thermophilum)
- Dna (25-mer) (7 kDa, DNA from Thermoflavifilum thermophilum)
- Tir domain-containing protein (53 kDa, Protein from Thermoflavifilum thermophilum)
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(p*up*gp*ap*cp*gp*gp*cp*up*cp*up*ap*ap*up*cp*up*ap*up*up*ap*gp*u)-3') (6 kDa, RNA from Thermoflavifilum thermophilum)
SPARTA monomer bound with guide-target, state 2
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8j8h
Q-score: 0.392
Guo L, Huang P, Li Z, Shin YC, Yan P, Lu M, Chen M, Xiao Y
Nat Chem Biol (2024) 20 pp. 512-520 [ DOI: doi:10.1038/s41589-023-01478-0 Pubmed: 37932527 ]
- Short ago complexed with tir-apaz (Complex from Thermoflavifilum thermophilum)
- Dna (25-mer) (7 kDa, DNA from Thermoflavifilum thermophilum)
- Tir domain-containing protein (56 kDa, Protein from Thermoflavifilum thermophilum)
- Magnesium ion (24 Da, Ligand)
- Piwi domain-containing protein (61 kDa, Protein from Thermoflavifilum thermophilum)
- Rna (5'-r(p*up*gp*ap*cp*gp*gp*cp*up*cp*up*ap*ap*up*cp*up*ap*up*up*ap*gp*u)-3') (6 kDa, RNA from Thermoflavifilum thermophilum)
CrtSPARTA hetero-dimer bound with guide-target, state 1
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8j9g
Q-score: 0.368
Guo L, Huang P, Li Z, Shin YC, Yan P, Lu M, Chen M, Xiao Y
Nat Chem Biol (2024) 20 pp. 512-520 [ DOI: doi:10.1038/s41589-023-01478-0 Pubmed: 37932527 ]
- Short ago complexed with tir-apaz (Complex from Thermoflavifilum thermophilum)
- Dna (25-mer) (7 kDa, DNA from Thermoflavifilum thermophilum)
- Tir domain-containing protein (56 kDa, Protein from Thermoflavifilum thermophilum)
- Magnesium ion (24 Da, Ligand)
- Piwi domain-containing protein (61 kDa, Protein from Thermoflavifilum thermophilum)
- Rna (5'-r(p*up*gp*ap*cp*gp*gp*cp*up*cp*up*ap*ap*up*cp*up*ap*up*up*ap*gp*u)-3') (6 kDa, RNA from Thermoflavifilum thermophilum)
SPARTA dimer bound with guide-target
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8j9p
Q-score: 0.441
Guo L, Huang P, Li Z, Shin YC, Yan P, Lu M, Chen M, Xiao Y
Nat Chem Biol (2024) 20 pp. 512-520 [ DOI: doi:10.1038/s41589-023-01478-0 Pubmed: 37932527 ]
- Piwi domain-containing protein (58 kDa, Protein from Thermoflavifilum thermophilum)
- Short ago complexed with tir-apaz (Complex from Thermoflavifilum thermophilum)
- Dna (25-mer) (7 kDa, DNA from Thermoflavifilum thermophilum)
- Tir domain-containing protein (53 kDa, Protein from Thermoflavifilum thermophilum)
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(p*up*gp*ap*cp*gp*gp*cp*up*cp*up*ap*ap*up*cp*up*ap*up*up*ap*gp*u)-3') (6 kDa, RNA from Thermoflavifilum thermophilum)