cryo-EM structure of Omicron BA.5 S protein in complex with XGv282
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8gto
Q-score: 0.342
Chi X, Xia L, Zhang G, Chi X, Huang B, Zhang Y, Chen Z, Han J, Wu L, Li Z, Sun H, Huang P, Yu C, Chen W, Zhou Q
Cell Discov (2023) 9 pp. 37-37 [ Pubmed: 37015915 DOI: doi:10.1038/s41421-023-00535-1 ]
- S protein of omicron ba.5 variant (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xgv282 (Complex from Homo sapiens)
- Heavy chain of xgv282 (12 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of omicron ba.5 s protein in complex with xgv282 (Complex)
- Light chain of xgv282 (11 kDa, Protein from Homo sapiens)
ACE2 -Targeting Monoclonal Antibody as Potent and Broad-Spectrum Coronavirus Blocker
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7v61
Q-score: 0.366
Chen Y, Zhang YN, Yan R, Wang G, Zhang Y, Zhang ZR, Li Y, Ou J, Chu W, Liang Z, Wang Y, Chen YL, Chen G, Wang Q, Zhou Q, Zhang B, Wang C
Signal Transduct Target Ther (2021) 6 pp. 315-315 [ Pubmed: 34433803 DOI: doi:10.1038/s41392-021-00740-y ]
- 3e8 (23 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ace2-b0at1 complex (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Sodium-dependent neutral amino acid transporter b(0)at1 (73 kDa, Protein from Homo sapiens)
- 3e8 (49 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (93 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
S protein of Delta variant in complex with ZWD12
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7wwl
Q-score: 0.444
Chi X, Guo Y, Zhang G, Sun H, Zhang J, Li M, Chen Z, Han J, Zhang Y, Zhang X, Fan P, Zhang Z, Wang B, Zai X, Han X, Hao M, Fang T, Xu J, Wu S, Chen Y, Fang Y, Dong Y, Sun B, Zhang J, Li J, Zhao G, Yu C, Zhou Q, Chen W
Signal Transduct Target Ther (2022) 7 pp. 139-139 [ Pubmed: 35478188 DOI: doi:10.1038/s41392-022-00987-z ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zwd12 (Complex from Homo sapiens)
- Light chain of zwd12 (11 kDa, Protein from Homo sapiens)
- Heavy chain of zwd12 (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S protein of delta variant (Complex from Severe acute respiratory syndrome coronavirus 2)
- S protein of delta variant in complex with zwd12 (Complex)
S protein of Delta variant in complex with ZWD12 focused on RBD_ZWD12 sub-complex
Chi X, Guo Y, Zhang G, Sun H, Zhang J, Li M, Chen Z, Han J, Zhang Y, Zhang X, Fan P, Zhang Z, Wang B, Zai X, Han X, Hao M, Fang T, Xu J, Wu S, Chen Y, Fang Y, Dong Y, Sun B, Zhang J, Li J, Zhao G, Yu C, Zhou Q, Chen W
Signal Transduct Target Ther (2022) 7 pp. 139-139 [ Pubmed: 35478188 DOI: doi:10.1038/s41392-022-00987-z ]
S protein of Delta variant in complex with ZWC6
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7wwm
Q-score: 0.338
Chi X, Guo Y, Zhang G, Sun H, Zhang J, Li M, Chen Z, Han J, Zhang Y, Zhang X, Fan P, Zhang Z, Wang B, Zai X, Han X, Hao M, Fang T, Xu J, Wu S, Chen Y, Fang Y, Dong Y, Sun B, Zhang J, Li J, Zhao G, Yu C, Zhou Q, Chen W
Signal Transduct Target Ther (2022) 7 pp. 139-139 [ Pubmed: 35478188 DOI: doi:10.1038/s41392-022-00987-z ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zwc6 (Complex from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of zwc6 (11 kDa, Protein from Homo sapiens)
- Heavy chain of zwc6 (13 kDa, Protein from Homo sapiens)
- S protein of delta variant in complex with zwc6 (Complex)
- S protein of delta variant (Complex from Severe acute respiratory syndrome coronavirus 2)
S protein of Delta variant in complex with ZWC6 focused on RBD_ZWC6 sub-complex
Chi X, Guo Y, Zhang G, Sun H, Zhang J, Li M, Chen Z, Han J, Zhang Y, Zhang X, Fan P, Zhang Z, Wang B, Zai X, Han X, Hao M, Fang T, Xu J, Wu S, Chen Y, Fang Y, Dong Y, Sun B, Zhang J, Li J, Zhao G, Yu C, Zhou Q, Chen W
Signal Transduct Target Ther (2022) 7 pp. 139-139 [ Pubmed: 35478188 DOI: doi:10.1038/s41392-022-00987-z ]