BA.2.86 S-trimer in complex with Nab XG2v046
Zhu Q, Liu P, Liu S, Yue C, Wang X
Signal Transduct Target Ther (2024) 9 pp. 217-217 [ Pubmed: 39191733 DOI: doi:10.1038/s41392-024-01940-y ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Xg2v046 light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Xg2v046 heavy chain (13 kDa, Protein from Homo sapiens)
- Ba.2.86 s-trimer in complex with nab xg2v046 (Complex from Severe acute respiratory syndrome coronavirus 2)
BA.2.86 S-trimer in complex with Nab XGv280
Zhu Q, Liu P, Liu S, Yue C, Wang X
Signal Transduct Target Ther (2024) 9 pp. 217-217 [ Pubmed: 39191733 DOI: doi:10.1038/s41392-024-01940-y ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ba.2.86 s-trimer in complex with nab xgv280 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xgv280 light chain (11 kDa, Protein from Homo sapiens)
- Xgv280 heavy chain (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (133 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of DiCas7-11 in complex with crRNA
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8wm4
Q-score: 0.435
Hong T, Luo Q, Ma H, Wang X, Li X, Shen C, Pang J, Wang Y, Chen Y, Zhang C, Su Z, Dong H, Tang X
Signal Transduct Target Ther (2024) 9 pp. 111-111 [ DOI: doi:10.1038/s41392-024-01821-4 Pubmed: 38735995 ]
- Crrna (38-mer) (12 kDa, RNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Binary complex of cas7-11 and crrna (Complex from Escherichia coli)
- Crispr-associated ramp family protein (183 kDa, Protein from Desulfonema ishimotonii)
Cryo-EM structure of DiCas7-11-crRNA in complex with regulator
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8wmc
Q-score: 0.538
Hong T, Luo Q, Ma H, Wang X, Li X, Shen C, Pang J, Wang Y, Chen Y, Zhang C, Su Z, Dong H, Tang X
Signal Transduct Target Ther (2024) 9 pp. 111-111 [ DOI: doi:10.1038/s41392-024-01821-4 Pubmed: 38735995 ]
- Zinc ion (65 Da, Ligand)
- Crispr-associated ramp family protein (183 kDa, Protein from Desulfonema ishimotonii)
- Ternary complex of cas7-11_crrna_tpr-chat (Complex from Escherichia coli)
- Rna (38-mer) (12 kDa, RNA from Escherichia coli)
- Chat domain-containing protein (88 kDa, Protein from Desulfonema ishimotonii)
Cryo-EM structure of DiCas7-11 mutant in complex with crRNA
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8wmi
Q-score: 0.426
Hong T, Luo Q, Ma H, Wang X, Li X, Shen C, Pang J, Wang Y, Chen Y, Zhang C, Su Z, Dong H, Tang X
Signal Transduct Target Ther (2024) 9 pp. 111-111 [ DOI: doi:10.1038/s41392-024-01821-4 Pubmed: 38735995 ]
- Binary complex of dicas7-11 mutant with crrna (Complex from Escherichia coli)
- Crispr-associated ramp family protein (183 kDa, Protein from Desulfonema ishimotonii)
- Crrna (39-mer) (12 kDa, RNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of Cas7-11-crRNA bound to N-terminal of TPR-CHAT
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 8wml
Q-score: 0.522
Hong T, Luo Q, Ma H, Wang X, Li X, Shen C, Pang J, Wang Y, Chen Y, Zhang C, Su Z, Dong H, Tang X
Signal Transduct Target Ther (2024) 9 pp. 111-111 [ DOI: doi:10.1038/s41392-024-01821-4 Pubmed: 38735995 ]
- Zinc ion (65 Da, Ligand)
- Crrna (38-mer) (12 kDa, RNA from Escherichia coli)
- Crispr-associated ramp family protein (183 kDa, Protein from Desulfonema ishimotonii)
- Chat domain-containing protein (7 kDa, Protein from Desulfonema ishimotonii)
- Ternary complex of cas7-11-crrna bound to n-terminal of tpr-chat (Complex from Escherichia coli)
Omicron spike variant BA.1 with Bn03
Resolution: 3.81 Å
EM Method: Single-particle
Fitted PDBs: 8i4h
Q-score: 0.201
Hao A, Song W, Li C, Zhang X, Tu C, Wang X, Wang P, Wu Y, Ying T, Sun L
Signal Transduct Target Ther (2023) 8 pp. 269-269 [ Pubmed: 37422451 DOI: doi:10.1038/s41392-023-01534-0 ]
- Omicron ba.1 spike with bn03 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bn03 (27 kDa, Protein from Homo sapiens)
- Bn03 (Complex)
- Ba.1 (Complex from Homo sapiens)
Omicron spike variant XBB with Bn03
Resolution: 3.98 Å
EM Method: Single-particle
Fitted PDBs: 8i4e
Q-score: 0.181
Hao A, Song W, Li C, Zhang X, Tu C, Wang X, Wang P, Wu Y, Ying T, Sun L
Signal Transduct Target Ther (2023) 8 pp. 269-269 [ Pubmed: 37422451 DOI: doi:10.1038/s41392-023-01534-0 ]
- Omicron spike with 6m6 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xbb (Complex from Homo sapiens)
- Bn03 (27 kDa, Protein from Homo sapiens)
- Bn03 (Complex)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Omicron spike variant XBB with n3130v-Fc
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8i4f
Q-score: 0.302
Hao A, Song W, Li C, Zhang X, Tu C, Wang X, Wang P, Wu Y, Ying T, Sun L
Signal Transduct Target Ther (2023) 8 pp. 269-269 [ Pubmed: 37422451 DOI: doi:10.1038/s41392-023-01534-0 ]
- Omicron spike with 6m6 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Xbb (Complex from Homo sapiens)
- N3130v-fc (42 kDa, Protein from Homo sapiens)
- Bn03 (Complex)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Omicron spike variant BQ.1.1 with n3130v-Fc
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 8i4g
Q-score: 0.266
Hao A, Song W, Li C, Zhang X, Tu C, Wang X, Wang P, Wu Y, Ying T, Sun L
Signal Transduct Target Ther (2023) 8 pp. 269-269 [ Pubmed: 37422451 DOI: doi:10.1038/s41392-023-01534-0 ]
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 6m6 (Complex from Severe acute respiratory syndrome coronavirus 2)
- N3130v-fc (42 kDa, Protein from Homo sapiens)
- N3130v-fc (Complex)
- Bq.1.1 (Complex from Homo sapiens)