The asymmetric unit of P22 empty capsid
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8i1t
Q-score: 0.62
Xiao H, Zhou J, Yang F, Liu Z, Song J, Chen W, Liu H, Cheng L
Viruses (2023) 15 [ Pubmed: 36851569 DOI: doi:10.3390/v15020355 ]
- Salmonella phage p22 (Virus from Salmonella phage P22)
- Major capsid protein (46 kDa, Protein from Salmonella phage P22)
The asymmetric unit of P22 procapsid
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8i1v
Q-score: 0.542
Xiao H, Zhou J, Yang F, Liu Z, Song J, Chen W, Liu H, Cheng L
Viruses (2023) 15 [ Pubmed: 36851569 DOI: doi:10.3390/v15020355 ]
- Scaffolding protein (33 kDa, Protein from Salmonella phage P22)
- Salmonella phage p22 (Virus from Salmonella phage P22)
- Major capsid protein (46 kDa, Protein from Salmonella phage P22)
Echovirus3 A-particle in complex with 6D10 Fab
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8gsc
Q-score: 0.47
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Echovirus e3 (Virus from Echovirus E3)
- Vp2 (27 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Echovirus3 a-particle in complex with 6d10 fab (Complex)
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
Echovirus3 full particle in complex with 6D10 Fab
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gsd
Q-score: 0.556
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Echovirus e3 (Virus from Echovirus E3)
- Echovirus3 full particle in complex with 6d10 fab (Complex)
- 6d10 fab (Complex from Mus musculus)
- Genome polyprotein (29 kDa, Protein from Echovirus E3)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Genome polyprotein (fragment) (32 kDa, Protein from Echovirus E3)
- Sphingosine (299 Da, Ligand)
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Genome polyprotein (fragment) (7 kDa, Protein from Echovirus E3)
- Genome polyprotein (26 kDa, Protein from Echovirus E3)
Echovirus3 empty particle in complex with 6D10 Fab (upright)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8gse
Q-score: 0.448
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Echovirus e3 (Virus from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Vp0 (28 kDa, Protein from Echovirus E3)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Echovirus3 empty particle in complex with 6d10 fab (upright) (Complex)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
Echovirus3 empty particle in complex with 6D10 Fab (sideling)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8gsf
Q-score: 0.445
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Echovirus3 empty particle in complex with 6d10 fab (sideling) (Complex)
- Echovirus e3 (Virus from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Vp0 (28 kDa, Protein from Echovirus E3)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
Complex of Echovirus 11 with its attaching receptor decay-accelerating factor (CD55)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8b8r
Q-score: 0.47
Zhou D, Qin L, Duyvesteyn HME, Zhao Y, Lin TY, Fry EE, Ren J, Huang KA, Stuart DI
Viruses (2022) 14 [ DOI: doi:10.3390/v14122625 Pubmed: 36560629 ]
- Vp4 (7 kDa, Protein from Echovirus E11)
- Decay accelerating factor (cd55) (29 kDa, Protein from Homo sapiens)
- Vp1 (32 kDa, Protein from Echovirus E11)
- Sphingosine (299 Da, Ligand)
- Vp3 (26 kDa, Protein from Echovirus E11)
- Complex of echovirus 11 with its attaching receptor decay accelerating factor (cd55) (Complex from Echovirus E11)
- Vp2 (28 kDa, Protein from Echovirus E11)
Structure of Echovirus 11 complexed with DAF (CD55) calculated from symmetry expansion
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 8b9f
Q-score: 0.303
Zhou D, Qin L, Duyvesteyn HME, Zhao Y, Lin TY, Fry EE, Ren J, Huang KA, Stuart DI
Viruses (2022) 14 [ DOI: doi:10.3390/v14122625 Pubmed: 36560629 ]
- Complement decay-accelerating factor (29 kDa, Protein from Homo sapiens)
- Complex of echovirus 11 with daf (Complex from Echovirus E11)
- Sphingosine (299 Da, Ligand)
- Genome polyprotein (26 kDa, Protein from Echovirus E11)
- Genome polyprotein (32 kDa, Protein from Echovirus E11)
- Genome polyprotein (28 kDa, Protein from Echovirus E11)
Chaetoceros socialis forma radians RNA virus 1 full capsid
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8b38
Q-score: 0.592
Wang H, Munke A, Li S, Tomaru Y, Okamoto K
Viruses (2022) 14 [ Pubmed: 36366467 DOI: doi:10.3390/v14112369 ]
- Chaetoceros socialis forma radians rna virus 1 (Virus from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (29 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (26 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (31 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
haetoceros socialis forma radians RNA virus 1 empty capsid
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8b3j
Q-score: 0.573
Wang H, Munke A, Li S, Tomaru Y, Okamoto K
Viruses (2022) 14 [ Pubmed: 36366467 DOI: doi:10.3390/v14112369 ]
- Chaetoceros socialis forma radians rna virus 1 (Virus from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (29 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (26 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)
- Structural polyprotein (31 kDa, Protein from Chaetoceros socialis forma radians RNA virus 1)