Structure of native di-heteromeric GluN1-GluN2B NMDA receptor in rat cortex and hippocampus
Resolution: 5.4 Å
EM Method: Single-particle
Fitted PDBs: 9jnn
Q-score: 0.183
Zhang M, Feng J, Xie C, Song N, Jin C, Wang J, Zhao Q, Zhang L, Wang B, Sun Y, Guo F, Li Y, Zhu S
Cell (2025) [ DOI: doi:10.1016/j.cell.2025.01.004 Pubmed: 39855198 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nmda receptor (Complex from Rattus norvegicus)
- Fab 4f11 (Complex)
- Heavy chain of glun2b fab2 (12 kDa, Protein from Mus musculus)
- Light chain of glun1 fab, 4f11 (11 kDa, Protein from Mus musculus)
- (2r)-4-(3-phosphonopropyl)piperazine-2-carboxylic acid (252 Da, Ligand)
- Glutamate receptor ionotropic, nmda 2b (91 kDa, Protein from Rattus norvegicus)
- Fab (Complex from Mus musculus)
- Glutamate receptor ionotropic, nmda 1 (91 kDa, Protein from Rattus norvegicus)
- Light chain of glun2b fab2 (11 kDa, Protein from Mus musculus)
- Native di-heteromeric glun1-glun2b nmda receptor in rat cortex and hippocampus (Tissue)
- Fab2 (Complex)
- Heavy chain of glun1 fab, 4f11 (13 kDa, Protein from Mus musculus)
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8w2p
Q-score: 0.394
Shen BW, Heiter D, Xu S, Stoddard BL
To Be Published
- Dna (41-mer) complementary strand of bsaxi dna substrate (15 kDa, DNA from Geobacillus stearothermophilus)
- Calcium ion (40 Da, Ligand)
- Site-specific dna-methyltransferase (adenine-specific) (107 kDa, Protein from Geobacillus stearothermophilus)
- Quaternary complex of rm, s and dna complex (2 MDa, Complex from Geobacillus stearothermophilus)
- Dna (41-mer) top strand of bsaxi cognate dna substrate (16 kDa, DNA from Geobacillus stearothermophilus)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- S.bsaxi (55 kDa, Protein from Geobacillus stearothermophilus)
- S-adenosylmethionine (398 Da, Ligand)
- Water (18 Da, Ligand)
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8w2q
Q-score: 0.396
Shen BW, Heiter D, Xu S, Stoddard BL
To Be Published
- Dna (41-mer) (16 kDa, DNA from Geobacillus stearothermophilus)
- Dna (41-mer) (15 kDa, DNA from Geobacillus stearothermophilus)
- Quaternary complex of rm, s and dna complex (2 MDa, Complex from Geobacillus stearothermophilus)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- S.bsaxi (55 kDa, Protein from Geobacillus stearothermophilus)
- S-adenosylmethionine (398 Da, Ligand)
- Rm.bsaxi (107 kDa, Protein from Geobacillus stearothermophilus)
CryoEM characterization of BrxL -- a unique AAA+ phage restriction Factor.
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8emc
Q-score: 0.326
Shen BW, Doyle LA, Werther R, Westburg AA, Bies DP, Walter SI, Luyten YA, Morgan RD, Stoddard BL, Kaiser BK
Nucleic Acids Res (2023) 51 pp. 3513-3528 [ Pubmed: 36794719 DOI: doi:10.1093/nar/gkad083 ]
- Protease lon-related brex system protein brxl (75 kDa, Protein from Acinetobacter sp. NEB 394)
- Dimer of heptamer complex of brxl (1 MDa, Complex from Acinetobacter)
CryoEM characterization of a unique AAA+ BrxL phage restriction factor
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 8emh
Q-score: 0.312
Shen BW, Doyle LA, Werther R, Westburg AA, Bies DP, Walter SI, Luyten YA, Morgan RD, Stoddard BL, Kaiser BK
Nucleic Acids Res (2023) 51 pp. 3513-3528 [ Pubmed: 36794719 DOI: doi:10.1093/nar/gkad083 ]
- Dna (64-mer) (19 kDa, DNA from synthetic construct)
- Protease lon-related brex system protein brxl (75 kDa, Protein from Acinetobacter sp. NEB 394)
- Complex of walkerb mutant of brxl with random sequence of dna fragments (950 kDa, Complex from Acinetobacter)
- Dna (63-mer) (19 kDa, DNA from synthetic construct)