Cryo-EM structure of the ribosome-bound Bacteroides thetaiotaomicron EF-G2
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8dmf
Q-score: 0.344
Han W, Peng BZ, Wang C, Townsend 2nd GE, Barry NA, Peske F, Goodman AL, Liu J, Rodnina MV, Groisman EA
EMBO J (2022) pp. e112372-e112372 [ DOI: doi:10.15252/embj.2022112372 Pubmed: 36472247 ]
- Tetracycline resistance protein tetq (80 kDa, Protein from Bacteroides thetaiotaomicron VPI-5482)
- Magnesium ion (24 Da, Ligand)
- Ribosome-bound bacteroides thetaiotaomicron ef-g2 (Complex from Bacteroides thetaiotaomicron VPI-5482)
- Guanosine-5'-triphosphate (523 Da, Ligand)
Structure of ubiquitinated FANCI in complex with FANCD2 and double-stranded DNA
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 7zf1
Q-score: 0.31
Lemonidis K, Rennie ML, Arkinson C, Chaugule VK, Clarke M, Streetley J, Walden H
EMBO J (2023) 42 pp. e111898-e111898 [ Pubmed: 36385258 DOI: doi:10.15252/embj.2022111898 ]
- Fanconi anemia group d2 protein (166 kDa, Protein from Homo sapiens)
- Complex of ubiquitinated fanci with fancd2 and double-stranded dna. (Complex from Homo sapiens)
- Dna (61-mer) (8 kDa, DNA from synthetic construct)
- Ubiquitin-60s ribosomal protein l40 (8 kDa, Protein from Homo sapiens)
- Fanconi anemia group i protein (152 kDa, Protein from Homo sapiens)
- Dna (61-mer) (8 kDa, DNA from synthetic construct)
The capsid structure of Human Parvovirus 4
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8ep9
Q-score: 0.487
Lakshmanan R, Mietzsch M, Jimenez Ybargollin A, Chipman P, Fu X, Qiu J, Soderlund-Venermo M, McKenna R
Viruses (2022) 14 [ Pubmed: 36298773 DOI: doi:10.3390/v14102219 ]
- Human parvovirus 4 (Virus from Human parvovirus 4)
- Human parvovirus 4 (61 kDa, Protein from Human parvovirus 4)
TIR-SAVED effector bound to cA3
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7qqk
Q-score: 0.405
Hogrel G, Guild A, Graham S, Rickman H, Gruschow S, Bertrand Q, Spagnolo L, White MF
Nature (2022) 608 pp. 808-812 [ Pubmed: 35948638 DOI: doi:10.1038/s41586-022-05070-9 ]
Cryo-EM structure of AAV True Type
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7na6
Q-score: 0.531
Bennett A, Hull J, Jolinon N, Tordo J, Moss K, Binns E, Mietzsch M, Hagemann C, Linden RM, Serio A, Chipman P, Sousa D, Broecker F, Seeberger P, Henckaerts E, McKenna R, Agbandje-McKenna M
J Struct Biol (2021) 213 pp. 107795-107795 [ DOI: doi:10.1016/j.jsb.2021.107795 Pubmed: 34509611 ]
- Adeno-associated virus (4 MDa, Virus from Adeno-associated virus)
- Capsid protein vp1 (58 kDa, Protein from Adeno-associated virus)
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7s1w
Q-score: 0.552
Mietzsch M, Yu JC, Hsi J, Chipman P, Broecker F, Fuming Z, Linhardt RJ, Seeberger PH, Heilbronn R, McKenna R, Agbandje-McKenna M
J Virol (2021) 95 pp. e0124921-e0124921 [ DOI: doi:10.1128/JVI.01249-21 Pubmed: 34549984 ]
- Adeno-associated virus (Virus from Adeno-associated virus)
- Capsid protein vp1 (58 kDa, Protein from Adeno-associated virus)
- Beta-d-galactopyranose (180 Da, Ligand)
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 7bjp
Q-score: 0.435
Sutherland H, Conley MJ, Emmott E, Streetley J, Goodfellow IG, Bhella D
J Virol (2021) 95 pp. e0028221-e0028221 [ DOI: doi:10.1128/JVI.00282-21 Pubmed: 33853966 ]
- Calicivirus isolate 2117 (Virus from Calicivirus isolate 2117)
- Capsid protein (58 kDa, Protein from Calicivirus isolate 2117)
Cryo-EM structure of USP1-UAF1 bound to mono-ubiquitinated FANCD2, and FANCI
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7ay1
Q-score: 0.432
Rennie ML, Arkinson C, Chaugule VK, Toth R, Walden H
Nat Struct Mol Biol (2021) 28 pp. 356-364 [ DOI: doi:10.1038/s41594-021-00576-8 Pubmed: 33795880 ]
- Fanconi anemia group i protein (150 kDa, Protein from Homo sapiens)
- Enzyme substrate complex of usp1-uaf1 and fanci-fancd2ub (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Enzyme substrate complex of usp1-uaf1 and fanci-fancd2ub-dsdna (490 kDa, Complex)
- Ubiquitin carboxyl-terminal hydrolase 1 (88 kDa, Protein from Homo sapiens)
- Fanconi anemia group d2 protein (164 kDa, Protein from Homo sapiens)
- Dna (61-mer) (5 kDa, DNA from synthetic construct)
- Wd repeat-containing protein 48 (78 kDa, Protein from Homo sapiens)
- Dna (Complex from synthetic construct)
- Ubiquitin-60s ribosomal protein l40 (8 kDa, Protein from Homo sapiens)
Lethocerus Myosin II complete coiled-coil domain resolved in its native environment
Resolution: 4.25 Å
EM Method: Single-particle
Fitted PDBs: 7kog
Q-score: 0.044
Rahmani H, Ma W, Hu Z, Daneshparvar N, Taylor DW, McCammon JA, Irving TC, Edwards RJ, Taylor KA
PNAS (2021) 118 [ Pubmed: 33782130 DOI: doi:10.1073/pnas.2024151118 ]
Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6om6
Q-score: 0.44
Aron ZD, Mehrani A, Hoffer ED, Connolly KL, Srinivas P, Torhan MC, Alumasa JN, Cabrera M, Hosangadi D, Barbor JS, Cardinale SC, Kwasny SM, Morin LR, Butler MM, Opperman TJ, Bowlin TL, Jerse A, Stagg SM, Dunham CM, Keiler KC
Nat Commun (2021) 12 pp. 1799-1799 [ Pubmed: 33741965 DOI: doi:10.1038/s41467-021-22012-7 ]
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 50s subunit (Complex from Escherichia coli)
- 30s subunit (Complex from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- Mrna (1 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- Trna(gly) (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- Structure of trans-translation inhibitor bound to e. coli 70s ribosome with p site trna (800 kDa, Complex from Escherichia coli)
- 4-amino-n-[5-(4-ethynylphenyl)-1,3,4-oxadiazol-2-yl]benzamide (304 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)