Ribosome conformation along minimum free-energy trajectory
Dashti A, Schwander P, Langlois R, Fung R, Li W, Hosseinizadeh A, Liao HY, Pallesen J, Sharma G, Stupina VA, Simon AE, Dinman J, Frank J, Ourmazd A
PNAS (2014) 111 pp. 17492-17497 [ Pubmed: 25422471 DOI: doi:10.1073/pnas.1419276111 ]
Structure of the mammalian ribosomal pre-termination complex associated with eRF1-eRF3-GDPNP
Resolution: 9.7 Å
EM Method: Single-particle
Fitted PDBs: 3j5y
Q-score: 0.117
des Georges A, Hashem Y, Unbehaun A, Grassucci RA, Taylor D, Hellen CU, Pestova TV, Frank J
Nucleic Acids Res (2014) 42 pp. 3409-3418 [ DOI: doi:10.1093/nar/gkt1279 Pubmed: 24335085 ]
- Transfer-messenger rna leu (25 kDa, RNA from Oryctolagus cuniculus)
- Messenger rna (RNA from Homo sapiens)
- Erf1-erf3-gdpnp-bound mammalian ribosomal pre-termination complex (4 MDa, Sample)
- 80s ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Eukaryotic release factor 3 (540 kDa, Protein from Homo sapiens)
- Eukaryotic release factor 1 (480 kDa, Protein from Homo sapiens)
Resolution: 14.7 Å
EM Method: Single-particle
Fitted PDBs: 4v6o
Q-score: 0.065
Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
PNAS (2012) 109 pp. 6094-6099 [ Pubmed: 22467828 DOI: doi:10.1073/pnas.1201288109 ]
- Trp-trna-eftu-gdp-kir-70s ribosome (2 MDa, Sample)
- 70s ribosome (Complex from Escherichia coli)
Resolution: 13.1 Å
EM Method: Single-particle
Fitted PDBs: 4v6s
Q-score: 0.068
Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
PNAS (2012) 109 pp. 6094-6099 [ Pubmed: 22467828 DOI: doi:10.1073/pnas.1201288109 ]
- Trp-trna-eftu-gdp-kir-70s ribosome (2 MDa, Sample)
- 70s ribosome (Complex from Escherichia coli)
Resolution: 12.1 Å
EM Method: Single-particle
Fitted PDBs: 4v6n
Q-score: 0.077
Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
PNAS (2012) 109 pp. 6094-6099 [ Pubmed: 22467828 DOI: doi:10.1073/pnas.1201288109 ]
- Trp-trna-eftu-gdp-kir-70s ribosome (2 MDa, Sample)
- 70s ribosome (Complex from Escherichia coli)
Resolution: 11.5 Å
EM Method: Single-particle
Fitted PDBs: 4v6r
Q-score: 0.073
Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
PNAS (2012) 109 pp. 6094-6099 [ Pubmed: 22467828 DOI: doi:10.1073/pnas.1201288109 ]
- Trp-trna-eftu-gdp-kir-70s ribosome (2 MDa, Sample)
- 70s ribosome (Complex from Escherichia coli)
Resolution: 11.5 Å
EM Method: Single-particle
Fitted PDBs: 4v6q
Q-score: 0.074
Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
PNAS (2012) 109 pp. 6094-6099 [ Pubmed: 22467828 DOI: doi:10.1073/pnas.1201288109 ]
- Trp-trna-eftu-gdp-kir-70s ribosome (2 MDa, Sample)
- 70s ribosome (Complex from Escherichia coli)
Resolution: 13.5 Å
EM Method: Single-particle
Fitted PDBs: 4v6p
Q-score: 0.064
Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
PNAS (2012) 109 pp. 6094-6099 [ Pubmed: 22467828 DOI: doi:10.1073/pnas.1201288109 ]
- Trp-trna-eftu-gdp-kir-70s ribosome (2 MDa, Sample)
- 70s ribosome (Complex from Escherichia coli)
Resolution: 8.25 Å
EM Method: Single-particle
Fitted PDBs: 4v6k
Q-score: 0.16
Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
EMBO J (2011) 30 pp. 1497-1507 [ Pubmed: 21378755 DOI: doi:10.1038/emboj.2011.58 ]
- Cognate 70s-tc complex (2 MDa, Sample)
- Fmet-trnafmet (RNA from Escherichia coli)
- Trp-trnatrp (RNA from Escherichia coli)
- 70s ribosome (Complex from Escherichia coli)
- Ef-tu (Protein from Escherichia coli)
Resolution: 13.2 Å
EM Method: Single-particle
Fitted PDBs: 4v6l
Q-score: 0.098
Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J
EMBO J (2011) 30 pp. 1497-1507 [ Pubmed: 21378755 DOI: doi:10.1038/emboj.2011.58 ]
- Fmet-trnafmet (RNA from Escherichia coli)
- Trp-trnatrp (RNA from Escherichia coli)
- Near-cognate 70s-tc complex (2 MDa, Sample)
- 70s ribosome (Complex from Escherichia coli)
- Ef-tu (Protein from Escherichia coli)