Resolution: 21.0 Å
EM Method: Single-particle
Fitted PDBs: 7t62
Q-score: 0.055
Li N, Torres MB, Spetz MR, Wang R, Peng L, Tian M, Dower CM, Nguyen R, Sun M, Tai CH, de Val N, Cachau R, Wu X, Hewitt SM, Kaplan RN, Khan J, St Croix B, Thiele CJ, Ho M
Cell Rep Med (2021) 2 pp. 100297-100297 [ DOI: doi:10.1016/j.xcrm.2021.100297 Pubmed: 34195677 ]
- Ct3 (47 kDa, Protein from Mus musculus)
- Gpc2 het ct3 complex (Complex)
- Glypican-2 (61 kDa, Protein from Homo sapiens)
Negative stain EM structure of the human SAGA coactivator complex (TRRAP, core, splicing module)
Resolution: 19.09 Å
EM Method: Single-particle
Fitted PDBs: 7kts
Q-score: 0.048
Herbst DA, Esbin MN, Louder RK, Dugast-Darzacq C, Dailey GM, Fang Q, Darzacq X, Tjian R, Nogales E
Nat Struct Mol Biol (2021) 28 pp. 989-996 [ Pubmed: 34811519 DOI: doi:10.1038/s41594-021-00682-7 ]
- Transcription initiation factor tfiid subunit 10 (21 kDa, Protein from Homo sapiens)
- Ataxin-7 (95 kDa, Protein from Homo sapiens)
- Splicing factor 3b subunit 5 (10 kDa, Protein from Homo sapiens)
- Taf5-like rna polymerase ii p300/cbp-associated factor-associated factor 65 kda subunit 5l (66 kDa, Protein from Homo sapiens)
- Isoform 3 of transcription factor spt20 homolog (88 kDa, Protein from Homo sapiens)
- Transcription initiation factor tfiid subunit 9b (27 kDa, Protein from Homo sapiens)
- Transcriptional adapter 1 (37 kDa, Protein from Homo sapiens)
- Transcription initiation protein spt3 homolog,transcription initiation protein spt3 homolog,transcription initiation protein spt3 homolog (35 kDa, Protein from Homo sapiens)
- Human saga (Complex from Homo sapiens)
- Taf6-like rna polymerase ii p300/cbp-associated factor-associated factor 65 kda subunit 6l,taf6-like rna polymerase ii p300/cbp-associated factor-associated factor 65 kda subunit 6l,taf6-like rna polymerase ii p300/cbp-associated factor-associated factor 65 kda subunit 6l (62 kDa, Protein from Homo sapiens)
- Transformation/transcription domain-associated protein,transformation/transcription domain-associated protein,transformation/transcription domain-associated protein,transformation/transcription domain-associated protein,transformation/transcription domain-associated protein (419 kDa, Protein from Homo sapiens)
- Staga complex 65 subunit gamma (Complex from Homo sapiens)
- Human saga (1 MDa, Complex)
- Transcription initiation factor tfiid subunit 12 (17 kDa, Protein from Homo sapiens)
- Staga complex 65 subunit gamma, dhaa,staga complex 65 subunit gamma,staga complex 65 subunit gamma, dhaa,staga complex 65 subunit gamma,staga complex 65 subunit gamma, dhaa (83 kDa, Protein from unclassified Rhodococcus)
- Splicing factor 3b subunit 3 (135 kDa, Protein from Homo sapiens)
Proteinase K Determined by MicroED Phased by ARCIMBOLDO_SHREDDER
Richards LR, Millan C, Miao J, Martynowycz MW, Sawaya MR, Gonen T, Borges RJ, Uson I, Rodriguez JA
Acta Crystallogr D Struct Biol (2020) 76 pp. 703-712 [ DOI: doi:10.1107/S2059798320008049 ]
- Proteinase k (28 kDa, Protein from Parengyodontium album)
- Proteinase k (Complex from Parengyodontium album)
- Calcium ion (40 Da, Ligand)
- Water (18 Da, Ligand)
Cryo-electron microscopy structure of a RbcL-Raf1 supercomplex from Synechococcus elongatus PCC 7942
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6smh
Q-score: 0.354
Huang F, Kong WW, Sun Y, Chen T, Dykes GF, Jiang YL, Liu LN
PNAS (2020) [ DOI: doi:10.1073/pnas.2007990117 Pubmed: 32636267 ]
- Rubisco accumulation factor 1 (raf1) (Protein from Synechococcus elongatus (strain PCC 7942 / FACHB-805))
- Ribulose bisphosphate carboxylase large chain (Protein from Synechococcus elongatus PCC 7942 = FACHB-805)
- Rbcl-raf1 supercomplex of synechococcus elongatus 7942 (Complex from Synechococcus elongatus PCC 7942)
CryoEM structure of PilB from Geobacter metallireducens: C2ccocco conformation
Resolution: 7.8 Å
EM Method: Single-particle
Fitted PDBs: 6olj
Q-score: 0.155
McCallum M, Benlekbir S, Nguyen S, Tammam S, Rubinstein JL, Burrows LL, Howell PL
Nat Commun (2019) 10 pp. 5198-5198 [ DOI: doi:10.1038/s41467-019-13070-z Pubmed: 31729381 ]
CryoEM structure of PilT4 from Geobacter metallireducens with added ATP: C6cccccc conformation
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6olm
Q-score: 0.296
McCallum M, Benlekbir S, Nguyen S, Tammam S, Rubinstein JL, Burrows LL, Howell PL
Nat Commun (2019) 10 pp. 5198-5198 [ DOI: doi:10.1038/s41467-019-13070-z Pubmed: 31729381 ]
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 6jsh
Q-score: 0.291
Qiu S, Liu S, Zaoti ZF, Wang X, Cai G
J Mol Cell Biol (2019) 11 pp. 1098-1100 [ Pubmed: 31509190 DOI: doi:10.1093/jmcb/mjz096 ]
- Apo-state fatty acid synthase (Complex from Schizosaccharomyces pombe)
- Fatty acid synthase subunit alpha (186 kDa, Protein from Saccharomyces cerevisiae)
- Fatty acid synthase subunit alpha (8 kDa, Protein from Saccharomyces cerevisiae)
- Fatty acid synthase subunit beta (200 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 10.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 6dlv
Q-score: 0.133
Kong L, Sochacki KA, Wang H, Fang S, Canagarajah B, Kehr AD, Rice WJ, Strub MP, Taraska JW, Hinshaw JE
Nature (2018) 560 pp. 258-262 [ DOI: doi:10.1038/s41586-018-0378-6 Pubmed: 30069048 ]
Cryo-EM structure of human TRPV6-Y467A in complex with 2-Aminoethoxydiphenyl borate (2-APB)
Resolution: 4.44 Å
EM Method: Single-particle
Fitted PDBs: 6d7t
Q-score: 0.354
Singh AK, Saotome K, McGoldrick LL, Sobolevsky AI
Nat Commun (2018) 9 pp. 2465-2465 [ Pubmed: 29941865 DOI: doi:10.1038/s41467-018-04828-y ]
- 2-aminoethyl diphenylborinate (225 Da, Ligand)
- Transient receptor potential cation channel subfamily v member 6 (85 kDa, Protein from Homo sapiens)
- Trpv6 in amphipols (Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
Structure of bare actin filament
Resolution: 5.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 6bno
Q-score: 0.211
Gurel PS, Kim LY, Ruijgrok PV, Omabegho T, Bryant Z, Alushin GM
eLife (2017) 6 [ DOI: doi:10.7554/eLife.31125 Pubmed: 29199952 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Bare actin filament (42 kDa, Complex from Oryctolagus cuniculus)
- Actin, alpha skeletal muscle (41 kDa, Protein from Oryctolagus cuniculus)