Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9jm0
Q-score: 0.492
Wang Y, Wang C, Guan Z, Cao J, Xu J, Wang S, Cui Y, Wang Q, Chen Y, Yin Y, Zhang D, Liu H, Sun M, Jin S, Tao P, Zou T
Cell Rep (2024) 43 pp. 114857-114857 [ Pubmed: 39395169 DOI: doi:10.1016/j.celrep.2024.114857 ]
- Rna (82-mer) (26 kDa, RNA from Escherichia coli)
- Rna (5'-r(p*cp*gp*up*ap*ap*gp*gp*gp*up*gp*cp*gp*cp*a)-3') (4 kDa, RNA from Escherichia coli)
- Nicotinamide (122 Da, Ligand)
- Dna (85-mer) (26 kDa, DNA from Escherichia coli)
- [(2r,3s,4r,5r)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2r,3s,4r,5s)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate (559 Da, Ligand)
- Retron ec86 reverse transcriptase (37 kDa, Protein from Escherichia coli)
- Retron ec86-effector fiber (Complex from Escherichia coli)
- Retron ec86 putative ribosyltransferase/dna-binding protein (35 kDa, Protein from Escherichia coli)
Cryo-EM structure of XCR1 signaling complex
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 9ast
Q-score: 0.455
Zhang X, Schlimgen RR, Singh S, Tomani MP, Volkman BF, Zhang C
PNAS (2024) 121 pp. e2405732121-e2405732121 [ DOI: doi:10.1073/pnas.2405732121 Pubmed: 39565315 ]
- Lymphotactin (13 kDa, Protein from Homo sapiens)
- Xcl1-xcr1-gi complex (Complex from Spodoptera frugiperda)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Chemokine xc receptor 1,non structural polyprotein (60 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Scfv16 (28 kDa, Protein from Mus musculus)
Cryo-EM structure of opioid receptor with biased agonist
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8y45
Q-score: 0.407
Cheng L, Miao Z, Liu S, Li Z, Fu H, Xu C, Hu S, Zhao C, Liu Y, Zhao T, Liu W, Wang H, Liu R, Yan W, Tang X, Liu J, Shao Z, Ke B
Nat Commun (2024) 15 pp. 8284-8284 [ Pubmed: 39333070 DOI: doi:10.1038/s41467-024-52601-1 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-2 (40 kDa, Protein from Homo sapiens)
- Scfv16 (28 kDa, Protein from Mus musculus)
- Delta-type opioid receptor (36 kDa, Protein from Homo sapiens)
- ~{n},~{n}-diethyl-4-(5-oxidanylspiro[chromene-2,4'-piperidine]-4-yl)benzamide (392 Da, Ligand)
- Cryo-em structure of opioid receptor with biased agonist (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
Bay Y, Venskutonyte R, Frantsen SM, Thorsen TS, Musgaard M, Frydenvang K, Francotte P, Pirotte B, Biggin PC, Kristensen AS, Boesen T, Pickering DS, Gajhede M, Kastrup JS
FEBS J (2024) 291 pp. 1506-1529 [ Pubmed: 38145505 DOI: doi:10.1111/febs.17046 ]
Ionotropic glutamate receptor K3 with glutamate and BPAM
Bay Y, Venskutonyte R, Frantsen SM, Thorsen TS, Musgaard M, Frydenvang K, Francotte P, Pirotte B, Biggin PC, Kristensen AS, Boesen T, Pickering DS, Gajhede M, Kastrup JS
FEBS J (2024) 291 pp. 1506-1529 [ Pubmed: 38145505 DOI: doi:10.1111/febs.17046 ]
Negative stain EM assembly of MYC, JAZ, and NINJA complex
Resolution: 10.4 Å
EM Method: Single-particle
Fitted PDBs: 8t2i
Q-score: 0.038
Zhou XE, Zhang Y, Yao J, Zheng J, Zhou Y, He Q, Moreno J, Lam VQ, Cao X, Sugimoto K, Vanegas-Cano L, Kariapper L, Suino-Powell K, Zhu Y, Novick S, Griffin PR, Zhang F, Howe GA, Melcher K
Plant Commun. (2023) 4 pp. 100639-100639 [ Pubmed: 37322867 DOI: doi:10.1016/j.xplc.2023.100639 ]
- Transcription factor myc3 (20 kDa, Protein from Arabidopsis thaliana)
- Maltose/maltodextrin-binding periplasmic protein (44 kDa, Protein from Escherichia coli)
- Mbp fused myc jaz ninja complex (Complex from Arabidopsis thaliana)
- Protein tify 10a (27 kDa, Protein from Arabidopsis thaliana)
- Afp homolog 2 (44 kDa, Protein from Arabidopsis thaliana)
Negative stain map of UBR5 (dimer) in complex with RARA/RXRA
Tsai JM, Aguirre JD, Li YD, Brown J, Focht V, Kater L, Kempf G, Sandoval B, Schmitt S, Rutter JC, Galli P, Sandate CR, Cutler JA, Zou C, Donovan KA, Lumpkin RJ, Cavadini S, Park PMC, Sievers Q, Hatton C, Ener E, Regalado BD, Sperling MT, Slabicki M, Kim J, Zon R, Zhang Z, Miller PG, Belizaire R, Sperling AS, Fischer ES, Irizarry R, Armstrong SA, Thoma NH, Ebert BL
Mol Cell (2023) 83 pp. 2753-2767.e10 [ DOI: doi:10.1016/j.molcel.2023.06.028 Pubmed: 37478846 ]
- Ubr5 (Protein from Homo sapiens)
- Rxra (Protein from Homo sapiens)
- Ubr5 in complex with rara/rxra (Complex from Homo sapiens)
- Rara (Protein from Homo sapiens)
Neurofascin isoform NF155 extracellular domain
McKie SJ, Nicholson AS, Smith E, Fawke S, Caroe ER, Williamson JC, Butt BG, Kolarova D, Peterka O, Holcapek M, Lehner PJ, Graham SC, Deane JE
PNAS (2023) 120 pp. e2218823120-e2218823120 [ Pubmed: 36996106 DOI: doi:10.1073/pnas.2218823120 ]
- Neurofascin isoform nf155 (140 kDa, Cellular component from Homo sapiens)
- Neurofascin isoform nf155 (Protein from Homo sapiens)
ATG9A and ATG2A form a heteromeric complex essential for autophagosome formation
van Vliet AR, Chiduza GN, Maslen SL, Pye VE, Joshi D, De Tito S, Jefferies HBJ, Christodoulou E, Roustan C, Punch E, Hervas JH, O'Reilly N, Skehel JM, Cherepanov P, Tooze SA
Mol Cell (2022) 82 pp. 4324-4339.e8 [ DOI: doi:10.1016/j.molcel.2022.10.017 Pubmed: 36347259 ]
Negative-stain electron microscopy structure of DDB1-DCAF12-CCT5
Resolution: 30.6 Å
EM Method: Single-particle
Fitted PDBs: 8ajo
Q-score: 0.048
Pla-Prats C, Cavadini S, Kempf G, Thoma NH
EMBO J (2023) 42 pp. e112253-e112253 [ DOI: doi:10.15252/embj.2022112253 Pubmed: 36715408 ]
- Ddb1- and cul4-associated factor 12 (53 kDa, Protein from Homo sapiens)
- Complex of ddb1-dcaf12-cct5 (Complex from Homo sapiens)
- Dna damage-binding protein 1 (129 kDa, Protein from Homo sapiens)
- T-complex protein 1 subunit epsilon (62 kDa, Protein from Homo sapiens)