Electron Microscopy Data Bank

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The structure of ASFV DNA polymerase in apo state

Release date: Feb. 5, 2025
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 8ywg
Q-score: 0.37

Kuai L, Sun J, Peng Q, Zhao X, Yuan B, Liu S, Bi Y, Shi Y

Nucleic Acids Res (2024) 52 pp. 10717-10729 [ Pubmed: 39189451 DOI: doi:10.1093/nar/gkae739 ]

Sample:

Dna polymerase (139 kDa, Protein from African swine fever virus)
The asfv dna polymerase (Complex from African swine fever virus)

EMD-39634

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The structure of ASFV DNA polymerase in replicating state

Release date: Feb. 5, 2025
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ywi
Q-score: 0.508

Kuai L, Sun J, Peng Q, Zhao X, Yuan B, Liu S, Bi Y, Shi Y

Nucleic Acids Res (2024) 52 pp. 10717-10729 [ Pubmed: 39189451 DOI: doi:10.1093/nar/gkae739 ]

Sample:

The primer strand (7 kDa, DNA from African swine fever virus)
Dna polymerase (139 kDa, Protein from African swine fever virus)
Thymidine-5'-triphosphate (482 Da, Ligand)
Magnesium ion (24 Da, Ligand)
The template strand (11 kDa, DNA from African swine fever virus)
The asfv dna polymerase in replicating state (Complex from African swine fever virus)

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EMD-39638

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The structure of ASFV DNA polymerase in editing state

Release date: Feb. 5, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8ywm
Q-score: 0.346

Kuai L, Sun J, Peng Q, Zhao X, Yuan B, Liu S, Bi Y, Shi Y

Nucleic Acids Res (2024) 52 pp. 10717-10729 [ Pubmed: 39189451 DOI: doi:10.1093/nar/gkae739 ]

Sample:

Dna polymerase (139 kDa, Protein from African swine fever virus)
The template strand (8 kDa, DNA from African swine fever virus)
The asfv dna polymerase in editing state (Complex from African swine fever virus)
The primer strand (6 kDa, DNA from African swine fever virus)

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EMD-0845

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Cryo-EM structure of African Swine Fever Virus capsid block 2

Release date: Dec. 11, 2019
Resolution: 4.62 Å
EM Method: Single-particle

Liu S, Luo Y, Wang Y, Li S, Zhao Z, Bi Y, Sun J, Peng R, Song H, Zhu D, Sun Y, Li S, Zhang L, Wang W, Sun Y, Qi J, Yan J, Shi Y, Zhang X, Wang P, Qiu HJ, Gao GF

Cell Host Microbe (2019) 26 pp. 836-843.e3 [ Pubmed: 31787524 DOI: doi:10.1016/j.chom.2019.11.004 ]

Sample:

African swine fever virus (Virus from African swine fever virus)

EMD-0846

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Cryo-EM structure of African Swine Fever Virus capsid block 1

Release date: Dec. 11, 2019
Resolution: 4.66 Å
EM Method: Single-particle

Liu S, Luo Y, Wang Y, Li S, Zhao Z, Bi Y, Sun J, Peng R, Song H, Zhu D, Sun Y, Li S, Zhang L, Wang W, Sun Y, Qi J, Yan J, Shi Y, Zhang X, Wang P, Qiu HJ, Gao GF

Cell Host Microbe (2019) 26 pp. 836-843.e3 [ Pubmed: 31787524 DOI: doi:10.1016/j.chom.2019.11.004 ]

Sample:

African swine fever virus (Virus from African swine fever virus)

EMD-0847

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Cryo-EM structure of African Swine Fever Virus capsid block 3

Release date: Dec. 11, 2019
Resolution: 4.62 Å
EM Method: Single-particle

Liu S, Luo Y, Wang Y, Li S, Zhao Z, Bi Y, Sun J, Peng R, Song H, Zhu D, Sun Y, Li S, Zhang L, Wang W, Sun Y, Qi J, Yan J, Shi Y, Zhang X, Wang P, Qiu HJ, Gao GF

Cell Host Microbe (2019) 26 pp. 836-843.e3 [ Pubmed: 31787524 DOI: doi:10.1016/j.chom.2019.11.004 ]

Sample:

African swine fever virus (Virus from African swine fever virus)

EMD-0848

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Cryo-EM structure of African Swine Fever Virus capsid block 4

Release date: Dec. 11, 2019
Resolution: 5.32 Å
EM Method: Single-particle

Liu S, Luo Y, Wang Y, Li S, Zhao Z, Bi Y, Sun J, Peng R, Song H, Zhu D, Sun Y, Li S, Zhang L, Wang W, Sun Y, Qi J, Yan J, Shi Y, Zhang X, Wang P, Qiu HJ, Gao GF

Cell Host Microbe (2019) 26 pp. 836-843.e3 [ Pubmed: 31787524 DOI: doi:10.1016/j.chom.2019.11.004 ]

Sample:

African swine fever virus (Virus from African swine fever virus)

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