Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9fgs
Q-score: 0.451
To Be Published
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Single chain fragment scfv41n (27 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76 (510 kDa, Complex)
- Scfv76-77 single chain fragment (Complex from Homo sapiens)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9fgt
Q-score: 0.479
To Be Published
- Spike glycoprotein,fibritin (135 kDa, Protein from Enterobacteria phage T4)
- Single chain fragment scfv76 (28 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76 (510 kDa, Complex)
- Scfv76 single chain fragment (Complex from Homo sapiens)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 9fgu
Q-score: 0.349
To Be Published
- Spike glycoprotein,fibritin (135 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76-77 (510 kDa, Complex)
- Sars-cov-2 (b.1.1.529/omicron variant) spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Scfv76-77 single chain fragment (28 kDa, Protein from Homo sapiens)
- Scfv76-77 single chain fragment (Complex from Homo sapiens)
BA.4/5 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8aqw
Q-score: 0.452
Ni D, Turelli P, Beckert B, Nazarov S, Uchikawa E, Myasnikov A, Pojer F, Trono D, Stahlberg H, Lau K
PLoS Pathog (2023) 19 pp. e1011206-e1011206 [ Pubmed: 37018380 DOI: doi:10.1371/journal.ppat.1011206 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- Ba.4/5 sars-cov-2 spike bound to mouse ace2 (local) (430 kDa, Complex)
- Sars-cov-2 ba.4/5 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2,ig gamma-2a chain c region, a allele (101 kDa, Protein from Mus musculus)
- Mouse ace2 (Complex from Mus musculus)
BA.4/5 SARS-CoV-2 Spike bound to human ACE2 (local)
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 8aqs
Q-score: 0.549
Ni D, Turelli P, Beckert B, Nazarov S, Uchikawa E, Myasnikov A, Pojer F, Trono D, Stahlberg H, Lau K
PLoS Pathog (2023) 19 pp. e1011206-e1011206 [ Pubmed: 37018380 DOI: doi:10.1371/journal.ppat.1011206 ]
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ba.4/5 sars-cov-2 spike bound to human ace2 (local) (430 kDa, Complex)
- Processed angiotensin-converting enzyme 2 (101 kDa, Protein from Homo sapiens)
- Sars-cov-2 ba.4/5 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Human ace2 (Complex from Homo sapiens)
- Water (18 Da, Ligand)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
Beta SARS-CoV-2 Spike bound to mouse ACE2 (local)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8aqt
Q-score: 0.212
Ni D, Turelli P, Beckert B, Nazarov S, Uchikawa E, Myasnikov A, Pojer F, Trono D, Stahlberg H, Lau K
PLoS Pathog (2023) 19 pp. e1011206-e1011206 [ Pubmed: 37018380 DOI: doi:10.1371/journal.ppat.1011206 ]
- Beta sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2,ig gamma-2a chain c region, membrane-bound form (101 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Mouse ace2 (Complex from Homo sapiens)
- Beta sars-cov-2 spike bound to mouse ace2 (430 kDa, Complex)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
BA.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8aqu
Q-score: 0.332
Ni D, Turelli P, Beckert B, Nazarov S, Uchikawa E, Myasnikov A, Pojer F, Trono D, Stahlberg H, Lau K
PLoS Pathog (2023) 19 pp. e1011206-e1011206 [ Pubmed: 37018380 DOI: doi:10.1371/journal.ppat.1011206 ]
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- Processed angiotensin-converting enzyme 2,ig gamma-2a chain c region, membrane-bound form (101 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov2 ba1 bound to mouse ace2 (430 kDa, Complex)
- Sars-cov-2 ba.1 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Mouse ace2 (Complex from Mus musculus)
BA.2.12.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 8aqv
Q-score: 0.513
Ni D, Turelli P, Beckert B, Nazarov S, Uchikawa E, Myasnikov A, Pojer F, Trono D, Stahlberg H, Lau K
PLoS Pathog (2023) 19 pp. e1011206-e1011206 [ Pubmed: 37018380 DOI: doi:10.1371/journal.ppat.1011206 ]
- Processed angiotensin-converting enzyme 2,ig gamma-2a chain c region, membrane-bound form (101 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov2 ba.2.12.1 bound to mouse ace2 (430 kDa, Complex)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- Sars-cov-2 ba.2.12.1 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Mouse ace2 (Complex from Mus musculus)
SARS-CoV-2 Spike protein in complex with the single chain fragment scFv76
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7zce
Q-score: 0.354
Milazzo FM, Chaves-Sanjuan A, Minenkova O, Santapaola D, Anastasi AM, Battistuzzi G, Chiapparino C, Rosi A, Merlo Pich E, Albertoni C, Marra E, Luberto L, Viollet C, Spagnoli LG, Riccio A, Rossi A, Santoro MG, Ballabio F, Paissoni C, Camilloni C, Bolognesi M, De Santis R
Mol Ther (2022) 31 pp. 362-373 [ DOI: doi:10.1016/j.ymthe.2022.09.010 Pubmed: 36114671 ]
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Scfv76 single chain fragment (28 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76 (510 kDa, Complex)
- Scfv76 single chain fragment (Complex from Homo sapiens)
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7qdg
Q-score: 0.31
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]