SARS-CoV-2 Spike protein in complex with the single chain fragment scFv76
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7zce
Q-score: 0.354
Milazzo FM, Chaves-Sanjuan A, Minenkova O, Santapaola D, Anastasi AM, Battistuzzi G, Chiapparino C, Rosi A, Merlo Pich E, Albertoni C, Marra E, Luberto L, Viollet C, Spagnoli LG, Riccio A, Rossi A, Santoro MG, Ballabio F, Paissoni C, Camilloni C, Bolognesi M, De Santis R
Mol Ther (2022) 31 pp. 362-373 [ DOI: doi:10.1016/j.ymthe.2022.09.010 Pubmed: 36114671 ]
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Scfv76 single chain fragment (28 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76 (510 kDa, Complex)
- Scfv76 single chain fragment (Complex from Homo sapiens)
SARS-CoV-2 Spike RBD in complex with the single chain fragment scFv76 (Focused Refinement)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7zcf
Q-score: 0.387
Milazzo FM, Chaves-Sanjuan A, Minenkova O, Santapaola D, Anastasi AM, Battistuzzi G, Chiapparino C, Rosi A, Merlo Pich E, Albertoni C, Marra E, Luberto L, Viollet C, Spagnoli LG, Riccio A, Rossi A, Santoro MG, Ballabio F, Paissoni C, Camilloni C, Bolognesi M, De Santis R
Mol Ther (2022) 31 pp. 362-373 [ DOI: doi:10.1016/j.ymthe.2022.09.010 Pubmed: 36114671 ]
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Scfv76 single chain fragment (28 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein in complex with the single chain fragment scfv76 (510 kDa, Complex)
- Scfv76 single chain fragment (Complex from Homo sapiens)
The unexpanded head structure of phage T4
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 7vrt
Q-score: 0.202
Fang Q, Tang WC, Fokine A, Mahalingam M, Shao Q, Rossmann MG, Rao VB
PNAS (2022) 119 pp. e2203272119-e2203272119 [ DOI: doi:10.1073/pnas.2203272119 Pubmed: 36161892 ]
- Escherichia virus t4 (Virus from Escherichia virus T4)
- Capsid vertex protein (47 kDa, Protein from Enterobacteria phage T4)
- Major capsid protein (56 kDa, Protein from Enterobacteria phage T4)
The expanded head structure of phage T4
Fang Q, Tang WC, Fokine A, Mahalingam M, Shao Q, Rossmann MG, Rao VB
PNAS (2022) 119 pp. e2203272119-e2203272119 [ DOI: doi:10.1073/pnas.2203272119 Pubmed: 36161892 ]
- Escherichia virus t4 (Virus from Escherichia virus T4)
- Capsid vertex protein (47 kDa, Protein from Enterobacteria phage T4)
- Small outer capsid protein (9 kDa, Protein from Enterobacteria phage T4)
- Major capsid protein (56 kDa, Protein from Enterobacteria phage T4)
Portal vertex structure of bacteriophage T4
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6uzc
Q-score: 0.232
Fang Q, Tang WC, Tao P, Mahalingam M, Fokine A, Rossmann MG, Rao VB
Nat Commun (2020) 11 pp. 1713-1713 [ DOI: doi:10.1038/s41467-020-15575-4 Pubmed: 32249784 ]
- Escherichia virus t4 (Virus from Escherichia virus T4)
- Portal protein (61 kDa, Protein from Enterobacteria phage T4)
- Major capsid protein (56 kDa, Protein from Enterobacteria phage T4)
Cryo-EM reconstruction of the bacteriophage T4 isometric capsid
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 5vf3
Q-score: 0.505
Chen Z, Sun L, Zhang Z, Fokine A, Padilla-Sanchez V, Hanein D, Jiang W, Rossmann MG, Rao VB
PNAS (2017) 114 pp. E8184-E8193 [ Pubmed: 28893988 DOI: doi:10.1073/pnas.1708483114 ]
- Major capsid protein (48 kDa, Protein from Enterobacteria phage T4)
- Capsid vertex protein gp24 (45 kDa, Protein from Enterobacteria phage T4)
- Highly immunogenic outer capsid protein (1 kDa, Protein from Enterobacteria phage T4)
- Highly immunogenic outer capsid protein (40 kDa, Protein from Enterobacteria phage T4)
- Enterobacteria phage t4 (Virus from Enterobacteria phage T4)
- Small outer capsid protein (9 kDa, Protein from Enterobacteria phage T4)
In vitro assembled star-shaped hubless T4 baseplate
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5hx2
Q-score: 0.44
Yap ML, Klose T, Arisaka F, Speir JA, Veesler D, Fokine A, Rossmann MG
PNAS (2016) 113 pp. 2654-2659 [ Pubmed: 26929357 DOI: doi:10.1073/pnas.1601654113 ]
- Baseplate wedge protein gp10 (66 kDa, Protein from Enterobacteria phage T4)
- Baseplate wedge protein gp53 (22 kDa, Protein from Enterobacteria phage T4)
- Baseplate wedge protein gp6 (74 kDa, Protein from Enterobacteria phage T4)
- Baseplate wedge protein gp7 (119 kDa, Protein from Enterobacteria phage T4)
- In vitro assembled hubless t4 baseplate (3 MDa, Complex from Enterobacteria phage T4)
- Baseplate wedge protein gp8 (38 kDa, Protein from Enterobacteria phage T4)
Electron cryo-microscopy of T4 portal protein
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 3ja7
Q-score: 0.427
Sun L, Zhang X, Gao S, Rao PA, Padilla-Sanchez V, Chen Z, Sun S, Xiang Y, Subramaniam S, Rao VB, Rossmann MG
Nat Commun (2015) 6 pp. 7548-7548 [ Pubmed: 26144253 DOI: doi:10.1038/ncomms8548 ]
- T4 portal protein gp20 (660 kDa, Protein from Enterobacteria phage T4)
- T4 portal protein gp20 (660 kDa, Sample)