The unexpanded head structure of phage T4
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 7vrt
Q-score: 0.202
Fang Q, Tang WC, Fokine A, Mahalingam M, Shao Q, Rossmann MG, Rao VB
PNAS (2022) 119 pp. e2203272119-e2203272119 [ DOI: doi:10.1073/pnas.2203272119 Pubmed: 36161892 ]
- Escherichia virus t4 (Virus from Escherichia virus T4)
- Capsid vertex protein (47 kDa, Protein from Enterobacteria phage T4)
- Major capsid protein (56 kDa, Protein from Enterobacteria phage T4)
The expanded head structure of phage T4
Fang Q, Tang WC, Fokine A, Mahalingam M, Shao Q, Rossmann MG, Rao VB
PNAS (2022) 119 pp. e2203272119-e2203272119 [ DOI: doi:10.1073/pnas.2203272119 Pubmed: 36161892 ]
- Escherichia virus t4 (Virus from Escherichia virus T4)
- Capsid vertex protein (47 kDa, Protein from Enterobacteria phage T4)
- Small outer capsid protein (9 kDa, Protein from Enterobacteria phage T4)
- Major capsid protein (56 kDa, Protein from Enterobacteria phage T4)
X-31 Hemagglutinin Precursor HA0 at pH 7.5
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7zj6
Q-score: 0.591
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
X-31 Hemagglutinin Precursor HA0 at pH 4.8
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 7zj7
Q-score: 0.352
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
X-31 Hemagglutinin Precursor HA0 at pH 7.5 after reneutralization
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7zj8
Q-score: 0.522
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
- Octyl beta-d-glucopyranoside (292 Da, Ligand)
- X-31 hemagglutinin precursor (ha0) (Complex from Influenza A virus (A/Aichi/2/1968(H3N2)))
- Hemagglutinin,fibritin (62 kDa, Protein from Tequatrovirus T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11 nanobody complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7z6v
Q-score: 0.434
Mikolajek H, Weckener M, Brotzakis ZF, Huo J, Dalietou EV, Le Bas A, Sormanni P, Harrison PJ, Ward PN, Truong S, Moynie L, Clare DK, Dumoux M, Dormon J, Norman C, Hussain N, Vogirala V, Owens RJ, Vendruscolo M, Naismith JH
PNAS (2022) 119 pp. e2205412119-e2205412119 [ DOI: doi:10.1073/pnas.2205412119 Pubmed: 35858383 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (139 kDa, Protein from Escherichia virus T4)
- Spike glycoprotein trimer with fibritin tag (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanobody h11 (Complex from Lama glama)
- Complex between spike and nanobody h11 (15 kDa, Complex)
- Nanobody h11 (14 kDa, Protein from Lama glama)
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-H6 nanobody complex
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7z7x
Q-score: 0.461
Mikolajek H, Weckener M, Brotzakis ZF, Huo J, Dalietou EV, Le Bas A, Sormanni P, Harrison PJ, Ward PN, Truong S, Moynie L, Clare DK, Dumoux M, Dormon J, Norman C, Hussain N, Vogirala V, Owens RJ, Vendruscolo M, Naismith JH
PNAS (2022) 119 pp. e2205412119-e2205412119 [ DOI: doi:10.1073/pnas.2205412119 Pubmed: 35858383 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein trimer with fibritin tag (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanobody h11-h6 (14 kDa, Protein from Lama glama)
- Complex between spike and nanobody h11-h6 (15 kDa, Complex)
- Nanobody h11-h6 (Complex from Lama glama)
- Spike glycoprotein,fibritin (139 kDa, Protein from Escherichia virus T4)
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-B5 nanobody complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7z85
Q-score: 0.447
Mikolajek H, Weckener M, Brotzakis ZF, Huo J, Dalietou EV, Le Bas A, Sormanni P, Harrison PJ, Ward PN, Truong S, Moynie L, Clare DK, Dumoux M, Dormon J, Norman C, Hussain N, Vogirala V, Owens RJ, Vendruscolo M, Naismith JH
PNAS (2022) 119 pp. e2205412119-e2205412119 [ DOI: doi:10.1073/pnas.2205412119 Pubmed: 35858383 ]
- Nanobody h11-b5 (Complex from Lama glama)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein trimer with fibritin tag (Complex from Severe acute respiratory syndrome coronavirus 2)
- Complex between spike and nanobody h11-b5 (15 kDa, Complex)
- Nanobody h11-b5 (14 kDa, Protein from Lama glama)
- Spike glycoprotein,fibritin (139 kDa, Protein from Escherichia virus T4)
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-H4 Q98R H100E nanobody complex in 1Up2Down conformation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7z86
Q-score: 0.379
Mikolajek H, Weckener M, Brotzakis ZF, Huo J, Dalietou EV, Le Bas A, Sormanni P, Harrison PJ, Ward PN, Truong S, Moynie L, Clare DK, Dumoux M, Dormon J, Norman C, Hussain N, Vogirala V, Owens RJ, Vendruscolo M, Naismith JH
PNAS (2022) 119 pp. e2205412119-e2205412119 [ DOI: doi:10.1073/pnas.2205412119 Pubmed: 35858383 ]
- Nanobody h11-h4 q98r h100e (14 kDa, Protein from Lama glama)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein trimer with fibritin tag (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanobody h11-h4 q98r h100e (Complex from Lama glama)
- Complex between spike and nanobody h11-h4 q98r h100e (15 kDa, Complex)
- Spike glycoprotein,fibritin (139 kDa, Protein from Escherichia virus T4)
CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-A10 nanobody complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7z9q
Q-score: 0.346
Mikolajek H, Weckener M, Brotzakis ZF, Huo J, Dalietou EV, Le Bas A, Sormanni P, Harrison PJ, Ward PN, Truong S, Moynie L, Clare DK, Dumoux M, Dormon J, Norman C, Hussain N, Vogirala V, Owens RJ, Vendruscolo M, Naismith JH
PNAS (2022) 119 pp. e2205412119-e2205412119 [ DOI: doi:10.1073/pnas.2205412119 Pubmed: 35858383 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein trimer (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanobody h11-a10 (14 kDa, Protein from Lama glama)
- Spike glycoprotein,fibritin (139 kDa, Protein from Tequatrovirus T4)
- Nanobody h11-a10 (Complex from Lama glama)
- Complex between spike and nanobody h11-a10 (15 kDa, Complex)