Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 8qo4
Q-score: 0.148
de Moura TR, Purta E, Bernat A, Martin-Cuevas EM, Kurkowska M, Baulin EF, Mukherjee S, Nowak J, Biela AP, Rawski M, Glatt S, Moreno-Herrero F, Bujnicki JM
Nucleic Acids Res (2024) 52 pp. 3419-3432 [ Pubmed: 38426934 DOI: doi:10.1093/nar/gkae144 ]
MERS 5' proximal stem-loop 5, conformation 1
Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R
PNAS (2024) 121 pp. e2320493121-e2320493121 [ Pubmed: 38427602 DOI: doi:10.1073/pnas.2320493121 ]
MERS 5' proximal stem-loop 5, conformation 2
Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R
PNAS (2024) 121 pp. e2320493121-e2320493121 [ Pubmed: 38427602 DOI: doi:10.1073/pnas.2320493121 ]
MERS 5' proximal stem-loop 5, conformation 3
Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R
PNAS (2024) 121 pp. e2320493121-e2320493121 [ Pubmed: 38427602 DOI: doi:10.1073/pnas.2320493121 ]
Hsieh CL, Werner AP, Leist SR, Stevens LJ, Falconer E, Goldsmith JA, Chou CW, Abiona OM, West A, Westendorf K, Muthuraman K, Fritch EJ, Schafer A, Denison MR, Chappell JD, Baric RS, Graham BS, Corbett KS, McLellan JS
Cell Rep (2021) 37 pp. 109929-109929 [ Pubmed: 34710354 DOI: doi:10.1016/j.celrep.2021.109929 ]
Structural basis for broad coronavirus neutralization
Sauer MM, Tortorici MA, Park YJ, Walls AC, Homad L, Acton OJ, Bowen JE, Wang C, Xiong X, de van der Schueren W, Quispe J, Hoffstrom BG, Bosch BJ, McGuire AT, Veesler D
Nat Struct Mol Biol (2021) 28 pp. 478-486 [ DOI: doi:10.1038/s41594-021-00596-4 Pubmed: 33981021 ]
MERS-CoV S bound to the broadly neutralizing B6 Fab fragment (C3 refinement)
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7m5e
Q-score: 0.605
Sauer MM, Tortorici MA, Park YJ, Walls AC, Homad L, Acton OJ, Bowen JE, Wang C, Xiong X, de van der Schueren W, Quispe J, Hoffstrom BG, Bosch BJ, McGuire AT, Veesler D
Nat Struct Mol Biol (2021) 28 pp. 478-486 [ DOI: doi:10.1038/s41594-021-00596-4 Pubmed: 33981021 ]
- Mers-cov s ectodomain trimer bound to the b6 fab fragment in the presence of 100 mm neuraminic acid (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (149 kDa, Protein from Middle East respiratory syndrome-related coronavirus)
- Mers-cov s ectodomain trimer (Complex from Middle East respiratory syndrome-related coronavirus)
- B6 fab fragment (Complex from Mus musculus)
- Folic acid (441 Da, Ligand)
- N-acetyl-alpha-neuraminic acid (309 Da, Ligand)
MERS S0 trimer in complex with antibody G2
Resolution: 4.19 Å
EM Method: Single-particle
Fitted PDBs: 6pz8
Q-score: 0.133
Wang N, Rosen O, Wang L, Turner HL, Stevens LJ, Corbett KS, Bowman CA, Pallesen J, Shi W, Zhang Y, Leung K, Kirchdoerfer RN, Becker MM, Denison MR, Chappell JD, Ward AB, Graham BS, McLellan JS
Cell Rep (2019) 28 pp. 3395-3405.e6 [ DOI: doi:10.1016/j.celrep.2019.08.052 Pubmed: 31553909 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- G2 light chain (23 kDa, Protein from Mus musculus)
- Antibody g2 (Complex from Mus musculus)
- S protein (51 kDa, Protein from Middle East respiratory syndrome-related coronavirus)
- Mers s0 ectodomain trimer in complex with antibody g2 (Complex)
- G2 heavy chain (24 kDa, Protein from Mus musculus)
- Mers s0 ectodomain trimer (Complex from Middle East respiratory syndrome-related coronavirus)
- S protein (80 kDa, Protein from Middle East respiratory syndrome-related coronavirus)