Resolution: 4.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 8s70
Q-score: 0.245
Vascon F, De Felice S, Gasparotto M, Huber ST, Catalano C, Chinellato M, Mezzetti R, Grinzato A, Filippini F, Maso L, Jakobi AJ, Cendron L
iScience (2025) 28 pp. 111726-111726 [ DOI: doi:10.1016/j.isci.2024.111726 Pubmed: 39898034 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Recombinase a (reca) assembled onto ssdna 72-mer in presence of atpgs and mg2+ (Complex)
- Ssdna (Complex from synthetic construct)
- Dna (1 kDa, DNA from synthetic construct)
- Recombinase a (reca) (Complex from Pseudomonas aeruginosa PAO1)
- Protein reca (35 kDa, Protein from Pseudomonas aeruginosa)
- Magnesium ion (24 Da, Ligand)
Type IV pilus from Pseudomonas PAO1 strain with PP7 Maturation protein
Resolution: 7.9 Å
EM Method: Single-particle
Fitted PDBs: 8tuw
Q-score: 0.087
Thongchol J, Yu Z, Harb L, Lin Y, Koch M, Theodore M, Narsaria U, Shaevitz J, Gitai Z, Wu Y, Zhang J, Zeng L
Science (2024) 384 pp. eadl0635-eadl0635 [ DOI: doi:10.1126/science.adl0635 Pubmed: 38574145 ]
- Maturation protein a (50 kDa, Protein from Pseudomonas phage PP7)
- Type iv twitching pilus (240 kDa, Cellular component from Pseudomonas aeruginosa)
- Type iv major pilin protein pila (14 kDa, Protein from Pseudomonas aeruginosa PAO1)
Glutamine synthetase from Pseudomonas aeruginosa, filament double-unit in compressed conformation
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8fbp
Q-score: 0.082
70S-PHIKZ014 PHIKZ phage protein occupied ribosome
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8cd1
Q-score: 0.461
Gerovac M, Chihara K, Wicke L, Bottcher B, Lavigne R, Vogel J
Nat Microbiol (2024) 9 pp. 787-800 [ DOI: doi:10.1038/s41564-024-01616-x Pubmed: 38443577 ]
- 50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l13 (16 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Phikz014 (43 kDa, Protein from Pseudomonas phage phiKZ)
- Large ribosomal subunit protein ul22 (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l25 (21 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s21 (8 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s15 (10 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s8 (14 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Trna (24 kDa, RNA from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s3 (25 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 5s rrna (38 kDa, RNA from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s6 (16 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s19 (10 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s13 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s16 (9 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s5 (17 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s10 (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l6 (19 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s17 (10 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s2 (27 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l31 (7 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l17 (14 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s18 (8 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l19 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l28 (9 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 70s-phikz014 phikz phage hijacked ribosome (Complex from Pseudomonas aeruginosa PAO1H2O)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l9 (15 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l27 (9 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l29 (7 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 23s rrna (935 kDa, RNA from Pseudomonas aeruginosa PAO1)
- 30s ribosomal protein s11 (13 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 16s rrna (494 kDa, RNA from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l5 (20 kDa, Protein from Pseudomonas aeruginosa PAO1)
- 50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa PAO1)
Cryo-EM structure of the c-di-GMP-free FleQ-FleN master regulator complex of P. aeruginosa
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8p53
Q-score: 0.461
Torres-Sanchez L, Gery Sana T, Decossas M, Hashem Y, Krasteva PV
PNAS (2023) 120 pp. e2312276120-e2312276120 [ Pubmed: 38051770 DOI: doi:10.1073/pnas.2312276120 ]
- Transcriptional regulator fleq (55 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Antiactivator flen (33 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- C-di-gmp-free fleq-flen complex (288 kDa, Complex from Pseudomonas aeruginosa PAO1)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8pb9
Q-score: 0.342
Torres-Sanchez L, Gery Sana T, Decossas M, Hashem Y, Krasteva PV
PNAS (2023) 120 pp. e2312276120-e2312276120 [ Pubmed: 38051770 DOI: doi:10.1073/pnas.2312276120 ]
- 9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2h,7h-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6h-purin-6-one) (690 Da, Ligand)
- Transcriptional regulator fleq (44 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
- C-di-gmp bound fleq-flen complex from pseudomonas aeruginosa (233 kDa, Complex from Pseudomonas aeruginosa PAO1)
- Antiactivator flen (30 kDa, Protein from Pseudomonas aeruginosa PAO1)
Cryo-EM structure of PvrA-DNA complex
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 7xaq
Q-score: 0.138
Zhu YB, Luo BN, Song YJ, Su ZM, Bao R
To Be Published
- Fadd1 (13 kDa, DNA from Pseudomonas aeruginosa PAO1)
- Probable transcriptional regulator (25 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Pvra-dna (200 kDa, Complex from Pseudomonas aeruginosa PAO1)
- Fadd1 (13 kDa, DNA from Pseudomonas aeruginosa PAO1)
CryoEM structure of dsDNA-RuvB-RuvA domain3 complex
Resolution: 7.02 Å
EM Method: Single-particle
Fitted PDBs: 7x7p
Q-score: 0.186
Zhang X, Zhou Z, Dai L, Chao Y, Liu Z, Huang M, Qu Q, Lin Z
Front Plant Sci (2023) 14 pp. 1139106-1139106 [ DOI: doi:10.3389/fpls.2023.1139106 Pubmed: 37025142 ]
- Dna (7 kDa, DNA from synthetic construct)
- Dna (Complex from Pseudomonas aeruginosa PAO1)
- Ruvb-ruva (Complex)
- Dna (7 kDa, DNA from synthetic construct)
- Ruvb region of the ruva-ruvb-holliday junction complex (Complex from synthetic construct)
- Holliday junction atp-dependent dna helicase ruvb (34 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Holliday junction atp-dependent dna helicase ruva (4 kDa, Protein from Pseudomonas aeruginosa PAO1)
CryoEM structure of RuvA-RuvB-Holliday junction complex
Resolution: 7.02 Å
EM Method: Single-particle
Fitted PDBs: 7x7q
Q-score: 0.167
Zhang X, Zhou Z, Dai L, Chao Y, Liu Z, Huang M, Qu Q, Lin Z
Front Plant Sci (2023) 14 pp. 1139106-1139106 [ DOI: doi:10.3389/fpls.2023.1139106 Pubmed: 37025142 ]
- Ruva-ruvb (Complex from synthetic construct)
- Dna (26-mer) (7 kDa, DNA from synthetic construct)
- Dna (Complex)
- Holliday junction atp-dependent dna helicase ruva (21 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Dna (40-mer) (12 kDa, DNA from synthetic construct)
- Dna (26-mer) (7 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruvb (38 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Ruva-ruvb-holliday junction complex (Complex from Pseudomonas aeruginosa PAO1)
- Dna (40-mer) (12 kDa, DNA from synthetic construct)
CryoEM structure of RuvA-Holliday junction complex
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7x5a
Q-score: 0.5
Zhang X, Zhou Z, Dai L, Chao Y, Liu Z, Huang M, Qu Q, Lin Z
Front Plant Sci (2023) 14 pp. 1139106-1139106 [ DOI: doi:10.3389/fpls.2023.1139106 Pubmed: 37025142 ]
- Dna (26-mer) (7 kDa, DNA from synthetic construct)
- Holliday junction atp-dependent dna helicase ruva (15 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Dna (26-mer) (7 kDa, DNA from synthetic construct)
- Ruva-holliday junction complex (Complex)
- Dna (26-mer) (7 kDa, DNA from synthetic construct)
- Holliday junction (Complex)
- Ruva (Complex from Pseudomonas aeruginosa PAO1)
- Dna (26-mer) (7 kDa, DNA from synthetic construct)