The cryo-EM map of TIC-TIEA complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8k59
Q-score: 0.337
Zhang KN, Liu Y, Chen M, Wang Y, Lin W, Li M, Zhang X, Gao Y, Gong Q, Chen H, Steve M, Li S, Zhang K, Liu B
To Be Published
- The cryo-em map of tic-tiea complex (400 kDa, Complex from Escherichia coli K-12)
- Dna (63-mer) (19 kDa, DNA from Escherichia coli K-12)
- Rna (5'-r(*ap*gp*gp*up*a)-3') (1 kDa, RNA from Escherichia coli K-12)
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli K-12)
- Dna (61-mer) (18 kDa, DNA from Escherichia coli K-12)
- Dna-directed rna polymerase subunit omega (8 kDa, Protein from Escherichia coli K-12)
- Rna polymerase sigma factor rpod (60 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta' (150 kDa, Protein from Escherichia coli K-12)
- 15 kda rna polymerase-binding protein (14 kDa, Protein from Escherichia phage T4)
structure of phage T6 topoisomerase II central domain bound with DNA
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ylu
Q-score: 0.592
To Be Published
- Dna(5'-d(p*tp*gp*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*tp*ap)) (6 kDa, DNA from DNA molecule)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Dna (5'-d(p*tp*ap*tp*ap*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*cp*a)-3') (6 kDa, DNA from DNA molecule)
- Magnesium ion (24 Da, Ligand)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Salmonella phage Chi)
- Phage t6 topoisomerase ii central domian bound with g-segment dna (Complex from Enterobacteria phage T6)
structure of phage T4 topoisomerase II central domain
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8yo3
Q-score: 0.427
To Be Published
structure of phage T4 topoisomerase II central domain bound with DNA
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8yo4
Q-score: 0.508
To Be Published
- Dna (5'-d(p*tp*gp*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*tp*ap*tp*a)-3') (16 kDa, DNA from DNA molecule)
- Dna (5'-d(p*ap*tp*ap*tp*ap*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*cp*ap*t)-3') (15 kDa, DNA from DNA molecule)
- Phage t4 topoisomerase ii gp39-gp60 subunit (77 kDa, Protein from Escherichia phage T4)
- Phage t4 topoisomerase ii central domian bound with g-segment dna (Complex from Escherichia phage T4)
- Magnesium ion (24 Da, Ligand)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
structure of phage T6 topoisomerase II central domain
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 8yo5
Q-score: 0.408
To Be Published
structure of phage T6 topoisomerase II central domain bound with DNA and m-AMSA
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8yo7
Q-score: 0.471
To Be Published
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Dna (5'-d(p*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*t)-3') (16 kDa, DNA from DNA molecule)
- N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide (393 Da, Ligand)
- Phage t6 topoisomerase ii central domain bound with dna and m-amsa (Complex from Enterobacteria phage T6)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)
- Dna (5'-d(p*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*a)-3') (15 kDa, DNA from DNA molecule)
structure of phage T4 topoisomerase II gp52 subunit WHD-open state
Resolution: 6.12 Å
EM Method: Single-particle
Fitted PDBs: 8yo9
Q-score: 0.111
To Be Published
structure of phage T6 apo full-length topoisomerase II
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 8yod
Q-score: 0.085
To Be Published
- Phage t6 apo full-length topoisomerase ii (Complex from Enterobacteria phage T6)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
structure of phage T6 full-length topoisomerase II bound with DNA
Resolution: 6.73 Å
EM Method: Single-particle
Fitted PDBs: 8yon
Q-score: 0.135
To Be Published
- Dna (50-mer) (16 kDa, DNA from DNA molecule)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Phage t6 full-length topoisomerase ii bound with dna (Complex from Enterobacteria phage T6)
The cryo-EM map of close TIEA-TEC complex
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8k58
Q-score: 0.32
Zhang KN, Liu Y, Chen M, Wang Y, Lin W, Li M, Zhang X, Gao Y, Gong Q, Chen H, Steve M, Li S, Zhang K, Liu B
To Be Published
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta' (150 kDa, Protein from Escherichia coli (strain K12))
- Dna (29-mer) (8 kDa, DNA from Escherichia coli (strain K12))
- Dna (29-mer) (8 kDa, DNA from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli (strain K12))
- Dna-directed rna polymerase subunit omega (8 kDa, Protein from Escherichia coli (strain K12))
- Rna (5'-r(*cp*gp*gp*ap*gp*ap*gp*gp*up*a)-3') (3 kDa, RNA from Escherichia coli (strain K12))
- 15 kda rna polymerase-binding protein (14 kDa, Protein from Escherichia phage T4)
- The cryo-em map of close tiea-tec complex (400 kDa, Complex from Escherichia coli (strain K12))