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structure of phage T6 topoisomerase II central domain bound with DNA
Release date: Sept. 25, 2024
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ylu
Q-score: 0.592
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ylu
Q-score: 0.592
To Be Published
Sample:
- Dna(5'-d(p*tp*gp*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*tp*ap)) (6 kDa, DNA from DNA molecule)
- Phage t6 topoisomerase ii central domian bound with g-segment dna (Complex from Enterobacteria phage T6)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Salmonella phage Chi)
- Magnesium ion (24 Da, Ligand)
- Dna (5'-d(p*tp*ap*tp*ap*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*cp*a)-3') (6 kDa, DNA from DNA molecule)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
structure of phage T4 topoisomerase II central domain bound with DNA
Release date: Sept. 25, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8yo4
Q-score: 0.508
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8yo4
Q-score: 0.508
To Be Published
Sample:
- Phage t4 topoisomerase ii gp39-gp60 subunit (77 kDa, Protein from Escherichia phage T4)
- Dna (5'-d(p*ap*tp*ap*tp*ap*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*cp*ap*t)-3') (15 kDa, DNA from DNA molecule)
- Dna (5'-d(p*tp*gp*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*tp*ap*tp*a)-3') (16 kDa, DNA from DNA molecule)
- Magnesium ion (24 Da, Ligand)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Phage t4 topoisomerase ii central domian bound with g-segment dna (Complex from Escherichia phage T4)
structure of phage T6 topoisomerase II central domain bound with DNA and m-AMSA
Release date: Sept. 25, 2024
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8yo7
Q-score: 0.471
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8yo7
Q-score: 0.471
To Be Published
Sample:
- Dna (5'-d(p*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*a)-3') (15 kDa, DNA from DNA molecule)
- Phage t6 topoisomerase ii central domain bound with dna and m-amsa (Complex from Enterobacteria phage T6)
- N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide (393 Da, Ligand)
- Dna (5'-d(p*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*t)-3') (16 kDa, DNA from DNA molecule)
- Magnesium ion (24 Da, Ligand)
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Water (18 Da, Ligand)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)
structure of phage T6 full-length topoisomerase II bound with DNA
Release date: Sept. 25, 2024
Resolution: 6.73 Å
EM Method: Single-particle
Fitted PDBs: 8yon
Q-score: 0.135
Resolution: 6.73 Å
EM Method: Single-particle
Fitted PDBs: 8yon
Q-score: 0.135
To Be Published
Sample:
- Dna topoisomerase medium subunit (51 kDa, Protein from Escherichia phage T4)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (16 kDa, DNA from DNA molecule)
- Phage t6 full-length topoisomerase ii bound with dna (Complex from Enterobacteria phage T6)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Dna topoisomerase (atp-hydrolyzing) (69 kDa, Protein from Enterobacteria phage T6)