Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 9hkv
Q-score: 0.37
Malecki PH, Wozniak K, Ruszkowski M, Brzezinski K
To Be Published
- Adenosylhomocysteinase (51 kDa, Protein from Pseudomonas aeruginosa PAO1)
- S-adenosyl-l-homocysteine hydrolase (200 kDa, Complex from Pseudomonas aeruginosa)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 9hkw
Q-score: 0.448
Malecki PH, Wozniak K, Ruszkowski M, Brzezinski K
To Be Published
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Adenosylhomocysteinase (51 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Potassium ion (39 Da, Ligand)
- S-adenosyl-l-homocysteine hydrolase (200 kDa, Complex from Pseudomonas aeruginosa)
- Adenosine (267 Da, Ligand)
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 9hkx
Q-score: 0.462
Malecki PH, Wozniak K, Ruszkowski M, Brzezinski K
To Be Published
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Adenosylhomocysteinase (51 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Potassium ion (39 Da, Ligand)
- S-adenosyl-l-homocysteine hydrolase (200 kDa, Complex from Pseudomonas aeruginosa)
- Adenosine (267 Da, Ligand)
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 9hky
Q-score: 0.339
Malecki PH, Wozniak K, Ruszkowski M, Brzezinski K
To Be Published
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Adenosylhomocysteinase (51 kDa, Protein from Pseudomonas aeruginosa PAO1)
- Potassium ion (39 Da, Ligand)
- S-adenosyl-l-homocysteine hydrolase (200 kDa, Complex from Pseudomonas aeruginosa)
- Adenosine (267 Da, Ligand)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9hkz
Q-score: 0.344
Malecki PH, Wozniak K, Ruszkowski M, Brzezinski K
To Be Published
- Adenosylhomocysteinase (51 kDa, Protein from Pseudomonas aeruginosa)
- Adenosine (267 Da, Ligand)
- S-adenosyl-l-homocysteine hydrolase (200 kDa, Complex from Pseudomonas aeruginosa)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Resolution: 4.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 8s70
Q-score: 0.245
Vascon F, De Felice S, Gasparotto M, Huber ST, Catalano C, Chinellato M, Mezzetti R, Grinzato A, Filippini F, Maso L, Jakobi AJ, Cendron L
iScience (2025) 28 pp. 111726-111726 [ DOI: doi:10.1016/j.isci.2024.111726 Pubmed: 39898034 ]
- Protein reca (35 kDa, Protein from Pseudomonas aeruginosa)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Recombinase a (reca) (Complex from Pseudomonas aeruginosa PAO1)
- Ssdna (Complex from synthetic construct)
- Dna (1 kDa, DNA from synthetic construct)
- Recombinase a (reca) assembled onto ssdna 72-mer in presence of atpgs and mg2+ (Complex)
Cryo-EM structure of Pseudomonas aeruginosa Recombinase A (RecA) in complex with LexAS125A mutant
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 8s7g
Q-score: 0.392
Vascon F, De Felice S, Gasparotto M, Huber ST, Catalano C, Chinellato M, Mezzetti R, Grinzato A, Filippini F, Maso L, Jakobi AJ, Cendron L
iScience (2025) 28 pp. 111726-111726 [ DOI: doi:10.1016/j.isci.2024.111726 Pubmed: 39898034 ]
- Magnesium ion (24 Da, Ligand)
- Lexa repressor (23 kDa, Protein from Pseudomonas aeruginosa)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Ssdna (Complex from synthetic construct)
- Cryo-em structure of pseudomonas aeruginosa recombinase a (reca) in complex with lexas125a mutant (Complex)
- Dna (36-mer) (10 kDa, DNA from synthetic construct)
- Recombinase a (reca) and lexa repressor (Complex from Pseudomonas aeruginosa)
- Protein reca (38 kDa, Protein from Pseudomonas aeruginosa)
Cryo-EM structure of PAO1-ImcA with GMPCPP
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8wcn
Q-score: 0.362
Zhan X, Zhang K, Wang C, Fan Q, Tang X, Zhang X, Wang K, Fu Y, Liang H
Nat Commun (2024) 15 pp. 1860-1860 [ DOI: doi:10.1038/s41467-024-46149-3 Pubmed: 38424057 ]
- Ggdef domain-containing protein (Complex from Pseudomonas aeruginosa)
- Diguanylate cyclase (51 kDa, Protein from Pseudomonas aeruginosa)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8the
Q-score: 0.664
Knejski PP, Erramilli SK, Kossiakoff AA
Structure (2024) 32 pp. 411- [ DOI: doi:10.1016/j.str.2024.01.007 Pubmed: 38325368 ]
- Water (18 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- (2~{r},4~{r},5~{s},6~{s})-6-[(1~{r})-1,2-bis(oxidanyl)ethyl]-2-[[(2~{r},3~{s},4~{s},5~{r},6~{s})-5-[[(3~{r})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{r},3~{r},4~{r},5~{s},6~{s})-3-oxidanyl-5-[[(3~{r})-3-oxidanyltetradecanoyl]amino]-4-[(3~{r})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{s})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]-4,5-bis(oxidanyl)oxane-2-carboxylic acid (2 kDa, Ligand)
- Synthetic antibody heavy chain (25 kDa, Protein from Homo sapiens)
- Heme bound p. aeruginosa phur with bound synthetic antibody (Complex from Pseudomonas aeruginosa)
- Heme/hemoglobin uptake outer membrane receptor phur (86 kDa, Protein from Pseudomonas aeruginosa)
- Synthetic antibody light chain (23 kDa, Protein from Homo sapiens)
cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8smr
Q-score: 0.608
Di Trani JM, Gheorghita AA, Turner M, Brzezinski P, Adelroth P, Vahidi S, Howell PL, Rubinstein JL
PNAS (2023) 120 pp. e2307093120-e2307093120 [ Pubmed: 37751552 DOI: doi:10.1073/pnas.2307093120 ]
- Ubiquinone-10 (863 Da, Ligand)
- Cytochrome c1 (26 kDa, Protein from Pseudomonas aeruginosa)
- (2r)-2-(methoxymethyl)-4-{[(25r)-spirost-5-en-3beta-yl]oxy}butyl 4-o-alpha-d-glucopyranosyl-beta-d-glucopyranoside (855 Da, Ligand)
- Ubiquinol-cytochrome c reductase iron-sulfur subunit (20 kDa, Protein from Pseudomonas aeruginosa)
- Copper (ii) ion (63 Da, Ligand)
- Cbb3-type cytochrome c oxidase subunit (34 kDa, Protein from Pseudomonas aeruginosa)
- Cytochrome bc1-cbb3 supercomplex (374 MDa, Complex from Pseudomonas aeruginosa)
- Cytochrome-c oxidase (52 kDa, Protein from Pseudomonas aeruginosa)
- Cbb3-type cytochrome c oxidase subunit ii (22 kDa, Protein from Pseudomonas aeruginosa)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome b (46 kDa, Protein from Pseudomonas aeruginosa)
- Cytochrome c4 (18 kDa, Protein from Pseudomonas aeruginosa)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Heme c (618 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Cytochrome c5 (13 kDa, Protein from Pseudomonas aeruginosa)