The isolated Vo domain of V/A-ATPase from Thermus thermophilus.
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ywt
Q-score: 0.476
Kishikawa JI, Nishida Y, Nakano A, Kato T, Mitsuoka K, Okazaki KI, Yokoyama K
Nat Commun (2024) 15 pp. 9883-9883 [ Pubmed: 39567487 DOI: doi:10.1038/s41467-024-53504-x ]
- V-type atp synthase, subunit k (10 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit c (35 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit i (72 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- The isolated vo domain of v/a-atpase from thermus thermophilus (300 kDa, Complex from Thermus thermophilus HB8)
- Water (18 Da, Ligand)
Vo domain of V/A-ATPase from Thermus thermophilus state1
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8yxz
Q-score: 0.452
Kishikawa JI, Nishida Y, Nakano A, Kato T, Mitsuoka K, Okazaki KI, Yokoyama K
Nat Commun (2024) 15 pp. 9883-9883 [ Pubmed: 39567487 DOI: doi:10.1038/s41467-024-53504-x ]
- Vo domain of v/a-atpase from thermus thermophilus. (300 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase, subunit k (10 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit i (72 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit c (35 kDa, Protein from Thermus thermophilus HB8)
Vo domain of V/A-ATPase from Thermus thermophilus state2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8yy0
Q-score: 0.442
Kishikawa JI, Nishida Y, Nakano A, Kato T, Mitsuoka K, Okazaki KI, Yokoyama K
Nat Commun (2024) 15 pp. 9883-9883 [ Pubmed: 39567487 DOI: doi:10.1038/s41467-024-53504-x ]
- Vo domain of v/a-atpase from thermus thermophilus. (300 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase, subunit k (10 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit i (72 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit c (35 kDa, Protein from Thermus thermophilus HB8)
Vo domain of V/A-ATPase from Thermus thermophilus state3
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8yy1
Q-score: 0.302
Kishikawa JI, Nishida Y, Nakano A, Kato T, Mitsuoka K, Okazaki KI, Yokoyama K
Nat Commun (2024) 15 pp. 9883-9883 [ Pubmed: 39567487 DOI: doi:10.1038/s41467-024-53504-x ]
- V-type atp synthase, subunit k (7 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit c (35 kDa, Protein from Thermus thermophilus HB8)
- Vo domain of v/a-atpase from thermus thermophilus. (300 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit i (71 kDa, Protein from Thermus thermophilus HB8)
1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8gxu
Q-score: 0.582
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 1 atp-bound v1eg of v/a-atpase from thermus thermophilus (600 kDa, Complex from Thermus thermophilus HB8)
2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8gxw
Q-score: 0.539
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
- 2 atp-bound v1eg of v/a-atpase from thermus thermophilus (600 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
3 nucleotide-bound V1EG of V/A-ATPase from Thermus thermophilus.
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8gxx
Q-score: 0.506
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- 3 nucleotide-bound v1eg of v/a-atpase from thermus thermophilus. (600 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus.
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gxy
Q-score: 0.56
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
- 2 sulfate-bound v1eg of v/a-atpase from thermus thermophilus. (600 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
1 sulfate and 1 ATP bound V1EG of V/A-ATPase from Thermus thermophilus.
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gxz
Q-score: 0.488
Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K
J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- Sulfate ion (96 Da, Ligand)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- 1 sulfate and 1 atp bound v1eg of v/a-atpase from thermus thermophilus (600 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
Nucleotide-free V/A-ATPase from Thermus thermophilus, State1
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- Nucleotide-free v/a-atpase from thermus thermophilus, state1 (700 kDa, Complex from Thermus thermophilus HB8)
- B subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- C subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- F subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- G subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- E subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)