Nucleotide-free V/A-ATPase from Thermus thermophilus, State1
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- Nucleotide-free v/a-atpase from thermus thermophilus, state1 (700 kDa, Complex from Thermus thermophilus HB8)
- B subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- C subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- F subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- G subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- E subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
V1EG of V/A-ATPase from Thermus thermophilus, state1-1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7vai
Q-score: 0.558
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- Nucleotide-free v/a-atpase from thermus thermophilus, state1 (700 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
Nucleotide-free V1EG domain of V/A-ATPase from Thermus thermophilus, state1-2
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7vaj
Q-score: 0.544
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- Nucleotide-free v1eg domain of v/a-atpase from thermus thermophilus, state1-2 (500 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
Nucleotide-free V/A-ATPase from Thermus thermophilus, state2
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- B subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thremophilus (Protein from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- C subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- Nucleotide-free v/a-atpase from thermus thermophilus, state2 (700 kDa, Complex from Thermus thermophilus HB8)
- F subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- G subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- E subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
Nucleotide-free V1EG domain of V/A-ATPase from Thermus thermophilus, state2
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7vak
Q-score: 0.381
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- Nucleotide-free v1eg domain of v/a-atpase from thermus thermophilus, state2 (500 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
Nucleotide-free V/A-ATPase from Thermus thermophilus, state3
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- B subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- Nucleotide-free v/a-atpase from thermus thermophilus, state3 (700 kDa, Complex from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thremophilus (Protein from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- C subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- F subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- G subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- E subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
V/A-ATPase from Thermus thermophilus, high ATP, state1-1
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- B subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- V/a-atpase from thermus thermophilus, high atp, state1-1 (700 kDa, Complex from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- C subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- F subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- G subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- E subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
V/A-ATPase ftom Thermus thermophilus, high ATP, state1-2
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- B subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- V/a-atpase from thermus thermophilus, high atp, state1-2 (700 kDa, Complex from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- C subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- D subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- F subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- A subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- G subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
- E subunit of v/a-atpase from thermus thermophilus (Protein from Thermus thermophilus HB8)
V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state1-1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7val
Q-score: 0.545
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- V-type atp synthase subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- V1eg of v/a-atpase from thermus thermophilus, high atp, state1-1 (400 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state1-2
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7vam
Q-score: 0.54
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mistuoka K, Yokoyama K
Nat Commun (2022) 13 pp. 1213-1213 [ Pubmed: 35260556 DOI: doi:10.1038/s41467-022-28832-5 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- V-type atp synthase, subunit g (13 kDa, Protein from Thermus thermophilus HB8)
- V1eg of v/a-atpase from thermus thermophilus, high atp, state1-2 (400 kDa, Complex from Thermus thermophilus HB8)