Tetrahymena ribozyme with water and magnesium ions
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 9cbw, 9cby
Q-score: 0.5455
Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Chiu W
To Be Published
- Apo l-21 scai tetrahymena ribozyme with water and metal ions. (125 kDa, Complex from Tetrahymena thermophila)
- Rna (387-mer) (125 kDa, RNA from Tetrahymena thermophila)
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
Tetrahymena ribozyme with water and magnesium ions
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9cbu, 9cbx
Q-score: 0.5565
Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Chiu W
To Be Published
- Apo l-21 scai tetrahymena ribozyme with water and metal ions. (125 kDa, Complex from Tetrahymena thermophila)
- Rna (387-mer) (125 kDa, RNA from Tetrahymena thermophila)
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
Structure of LARP7 protein p65-telomerase RNA complex in telomerase
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8gap
Q-score: 0.323
Wang Y, He Y, Wang Y, Yang Y, Singh M, Eichhorn CD, Cheng X, Jiang YX, Zhou ZH, Feigon J
J Mol Biol (2023) 435 pp. 168044-168044 [ Pubmed: 37330293 DOI: doi:10.1016/j.jmb.2023.168044 ]
- Tetrahymena telomerase holoenzyme (Complex from Tetrahymena thermophila)
- Telomerase associated protein p50 (50 kDa, Protein from Tetrahymena thermophila)
- Zinc ion (65 Da, Ligand)
- Telomerase la-related protein p65 (64 kDa, Protein from Tetrahymena thermophila)
- Telomere dna (9 kDa, DNA from synthetic construct)
- Telomerase reverse transcriptase (133 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb2 subunit (30 kDa, Protein from Tetrahymena thermophila)
- Telomerase rna (50 kDa, RNA from Tetrahymena thermophila)
- Telomerase holoenzyme teb1 subunit (82 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb3 subunit (14 kDa, Protein from Tetrahymena thermophila)
base module state 1 of Tetrahymena IFT-A
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8hmc
Q-score: 0.414
Ma Y, He J, Li S, Yao D, Huang C, Wu J, Lei M
Nat Commun (2023) 14 pp. 1506-1506 [ Pubmed: 36932088 DOI: doi:10.1038/s41467-023-37208-2 ]
- Zinc ion (65 Da, Ligand)
- Wd40 repeat protein (138 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 43 homolog (16 kDa, Protein from Tetrahymena thermophila)
- Tetratricopeptide repeat protein (154 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 122 homolog (143 kDa, Protein from Tetrahymena thermophila)
- Ift-a_base-1 (Complex from Tetrahymena thermophila)
base module state 2 of Tetrahymena IFT-A
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 8hmd
Q-score: 0.197
Ma Y, He J, Li S, Yao D, Huang C, Wu J, Lei M
Nat Commun (2023) 14 pp. 1506-1506 [ Pubmed: 36932088 DOI: doi:10.1038/s41467-023-37208-2 ]
- Zinc ion (65 Da, Ligand)
- Ift-a_base-2 (Complex from Tetrahymena thermophila)
- Wd40 repeat protein (138 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 43 homolog (16 kDa, Protein from Tetrahymena thermophila)
- Tetratricopeptide repeat protein (154 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 122 homolog (143 kDa, Protein from Tetrahymena thermophila)
head module state 1 of Tetrahymena IFT-A
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8hme
Q-score: 0.247
Ma Y, He J, Li S, Yao D, Huang C, Wu J, Lei M
Nat Commun (2023) 14 pp. 1506-1506 [ Pubmed: 36932088 DOI: doi:10.1038/s41467-023-37208-2 ]
- Zinc ion (65 Da, Ligand)
- Intraflagellar transporter (161 kDa, Protein from Tetrahymena thermophila)
- Wd40 repeat protein (158 kDa, Protein from Tetrahymena thermophila)
- Ift-a_head-1 (Complex from Tetrahymena thermophila)
- Intraflagellar transport protein 122 homolog (143 kDa, Protein from Tetrahymena thermophila)
head module state 2 of Tetrahymena IFT-A
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 8hmf
Q-score: 0.199
Ma Y, He J, Li S, Yao D, Huang C, Wu J, Lei M
Nat Commun (2023) 14 pp. 1506-1506 [ Pubmed: 36932088 DOI: doi:10.1038/s41467-023-37208-2 ]
- Zinc ion (65 Da, Ligand)
- Intraflagellar transporter (161 kDa, Protein from Tetrahymena thermophila)
- Wd40 repeat protein (158 kDa, Protein from Tetrahymena thermophila)
- Ift-a_head-2 (Complex from Tetrahymena thermophila)
- Intraflagellar transport protein 122 homolog (143 kDa, Protein from Tetrahymena thermophila)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8b6g
Q-score: 0.402
Muhleip A, Flygaard RK, Baradaran R, Haapanen O, Gruhl T, Tobiasson V, Marechal A, Sharma V, Amunts A
Nature (2023) 615 pp. 934-938 [ DOI: doi:10.1038/s41586-023-05817-y Pubmed: 36949187 ]
- Succinate dehydrogenase (quinone) (36 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (7 kDa, Protein from Tetrahymena thermophila)
- Sdhtt3 (23 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (35 kDa, Protein from Tetrahymena thermophila)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Diphthamide synthesis protein (22 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (11 kDa, Protein from Tetrahymena thermophila)
- Sdhtt11 (5 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (11 kDa, Protein from Tetrahymena thermophila)
- Heme c (618 Da, Ligand)
- Nmra domain-containing protein (36 kDa, Protein from Tetrahymena thermophila)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Transmembrane protein, putative (9 kDa, Protein from Tetrahymena thermophila)
- Transposase (11 kDa, Protein from Tetrahymena thermophila)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Duf4885 domain-containing protein (12 kDa, Protein from Tetrahymena thermophila)
- Cytochrome b-c1 complex subunit 8 (7 kDa, Protein from Tetrahymena thermophila)
- Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (70 kDa, Protein from Tetrahymena thermophila)
- Sdhd (5 kDa, Protein from Tetrahymena thermophila)
- Fe3-s4 cluster (295 Da, Ligand)
- Succinate dehydrogenase complex (complex-ii) (305 kDa, Complex from Tetrahymena thermophila)
- Calcium ion (40 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Ubiquinone-8 (727 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
Tetrahymena telomerase at 2.9 Angstrom resolution
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7uy6
Q-score: 0.506
He Y, Song H, Chan H, Liu B, Wang Y, Susac L, Zhou ZH, Feigon J
Nature (2022) 608 pp. 813-818 [ Pubmed: 35831498 DOI: doi:10.1038/s41586-022-04931-7 ]
- Zinc ion (65 Da, Ligand)
- Telomerase associated protein p50 (50 kDa, Protein from Tetrahymena thermophila)
- Tetrahymena telomerase holoenzyme (Complex from Tetrahymena thermophila)
- Telomerase la-related protein p65 (64 kDa, Protein from Tetrahymena thermophila)
- Telomerase reverse transcriptase (133 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb2 subunit (30 kDa, Protein from Tetrahymena thermophila)
- Telomere dna (19 kDa, DNA from Tetrahymena thermophila)
- Telomerase rna (50 kDa, RNA from Tetrahymena thermophila)
- Telomerase holoenzyme teb1 subunit (82 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb3 subunit (14 kDa, Protein from Tetrahymena thermophila)
Tetrahymena CST with Polymerase alpha-Primase
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7uy7
Q-score: 0.293
He Y, Song H, Chan H, Liu B, Wang Y, Susac L, Zhou ZH, Feigon J
Nature (2022) 608 pp. 813-818 [ Pubmed: 35831498 DOI: doi:10.1038/s41586-022-04931-7 ]
- Telomerase-associated protein of 75 kda (73 kDa, Protein from Tetrahymena thermophila)
- Zinc ion (65 Da, Ligand)
- Telomerase-associated protein of 19 kda (19 kDa, Protein from Tetrahymena thermophila)
- Tetrahymena dna polymerase alpha-primase (Complex from Tetrahymena thermophila)
- Tetrahymena cst (Complex from Tetrahymena thermophila)
- Dna polymerase (161 kDa, Protein from Tetrahymena thermophila)
- Telomere dna (19 kDa, DNA from Tetrahymena thermophila)
- Telomerase-associated protein of 45 kda (43 kDa, Protein from Tetrahymena thermophila)
- Tetrahymena cst-polaprim (Complex)
- Telomerase associated protein p50 (50 kDa, Protein from Tetrahymena thermophila)