48-nm doublet microtubule from Tetrahymena thermophila strain CU428
Kubo S, Black CS, Joachimiak E, Yang SK, Legal T, Peri K, Khalifa AAZ, Ghanaeian A, McCafferty CL, Valente-Paterno M, De Bellis C, Huynh PM, Fan Z, Marcotte EM, Wloga D, Bui KH
Nat Commun (2023) 14 pp. 2168-2168 [ DOI: doi:10.1038/s41467-023-37868-0 Pubmed: 37061538 ]
- Cfap127 (55 kDa, Protein from Tetrahymena thermophila)
- Cfap129 (31 kDa, Protein from Tetrahymena thermophila)
- Protofilament ribbon protein (34 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Cfap112a (45 kDa, Protein from Tetrahymena thermophila)
- Flagellar microtubule protofilament ribbon protein (72 kDa, Protein from Tetrahymena thermophila)
- Oj3 (14 kDa, Protein from Tetrahymena thermophila)
- Cfap182a (20 kDa, Protein from Tetrahymena thermophila)
- Cfap143 (30 kDa, Protein from Tetrahymena thermophila)
- Cfap182b (11 kDa, Protein from Tetrahymena thermophila)
- Rib26 (26 kDa, Protein from Tetrahymena thermophila)
- Cfap21a (48 kDa, Protein from Tetrahymena thermophila)
- B2b3_fmip (31 kDa, Protein from Tetrahymena thermophila)
- Rib72b (60 kDa, Protein from Tetrahymena thermophila)
- Cfap77a (28 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Rib43a protein (17 kDa, Protein from Tetrahymena thermophila)
- Rib27b (26 kDa, Protein from Tetrahymena thermophila)
- Nucleoside diphosphate kinase (42 kDa, Protein from Tetrahymena thermophila)
- Tubulin beta chain (49 kDa, Protein from Tetrahymena thermophila)
- Parkin co-regulated protein pacrga (36 kDa, Protein from Tetrahymena thermophila)
- Rib22 (22 kDa, Protein from Tetrahymena thermophila)
- Rib35 (34 kDa, Protein from Tetrahymena thermophila)
- Cfam166b (17 kDa, Protein from Tetrahymena thermophila)
- Stpg2 (33 kDa, Protein from Tetrahymena thermophila)
- Oj2 (19 kDa, Protein from Tetrahymena thermophila)
- Cfap107 (21 kDa, Protein from Tetrahymena thermophila)
- Cfam166a (25 kDa, Protein from Tetrahymena thermophila)
- Ij34 (34 kDa, Protein from Tetrahymena thermophila)
- Cfap20 (22 kDa, Protein from Tetrahymena thermophila)
- Rib38 (38 kDa, Protein from Tetrahymena thermophila)
- Flagellar flij protein (12 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Dna polymerase delta c4-type zinc-finger protein (31 kDa, Protein from Tetrahymena thermophila)
- Rib27a (27 kDa, Protein from Tetrahymena thermophila)
- Cfap161a (57 kDa, Protein from Tetrahymena thermophila)
- Cfap53 (60 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 45 (59 kDa, Protein from Tetrahymena thermophila)
- Cfap115 (110 kDa, Protein from Tetrahymena thermophila)
- 48-nm repeat unit of microtubule doublet from tetrahymena thermophila strain cu428 (7 MDa, Cellular component from Tetrahymena thermophila)
- Nebulin (61 kDa, Protein from Tetrahymena thermophila)
- Stpg1a (42 kDa, Protein from Tetrahymena thermophila)
- Cfap210 (61 kDa, Protein from Tetrahymena thermophila)
- Parkin co-regulated protein pacrgb (28 kDa, Protein from Tetrahymena thermophila)
- B5b6_fmip (43 kDa, Protein from Tetrahymena thermophila)
- Tubulin alpha chain (49 kDa, Protein from Tetrahymena thermophila)
- Cfap52a (73 kDa, Protein from Tetrahymena thermophila)
- Sb1 (17 kDa, Protein from Tetrahymena thermophila)
- Rib57 (57 kDa, Protein from Tetrahymena thermophila)
- Cfam166c (25 kDa, Protein from Tetrahymena thermophila)
48-nm doublet microtubule from Tetrahymena thermophila strain K40R
Kubo S, Black CS, Joachimiak E, Yang SK, Legal T, Peri K, Khalifa AAZ, Ghanaeian A, McCafferty CL, Valente-Paterno M, De Bellis C, Huynh PM, Fan Z, Marcotte EM, Wloga D, Bui KH
Nat Commun (2023) 14 pp. 2168-2168 [ DOI: doi:10.1038/s41467-023-37868-0 Pubmed: 37061538 ]
- Cilia- and flagella-associated protein 52 (73 kDa, Protein from Tetrahymena thermophila)
- B2b3_fmip (31 kDa, Protein from Tetrahymena thermophila)
- Nebulin (61 kDa, Protein from Tetrahymena thermophila)
- Rib27b (26 kDa, Protein from Tetrahymena thermophila)
- Cfap127 (55 kDa, Protein from Tetrahymena thermophila)
- Cfap129 (31 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Flagellar microtugule protofilament ribbon protein (72 kDa, Protein from Tetrahymena thermophila)
- Tubulin beta chain (49 kDa, Protein from Tetrahymena thermophila)
- Cfap112a (45 kDa, Protein from Tetrahymena thermophila)
- Parkin co-regulated protein pacrga (36 kDa, Protein from Tetrahymena thermophila)
- Tubulin alpha chain (49 kDa, Protein from Tetrahymena thermophila)
- Cfap115 (110 kDa, Protein from Tetrahymena thermophila)
- Cfap182a (20 kDa, Protein from Tetrahymena thermophila)
- Rib43a protein (17 kDa, Protein from Tetrahymena thermophila)
- Rib72b (60 kDa, Protein from Tetrahymena thermophila)
- Rib38 (38 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Stpg1a (42 kDa, Protein from Tetrahymena thermophila)
- Cfap107 (21 kDa, Protein from Tetrahymena thermophila)
- Rib22 (22 kDa, Protein from Tetrahymena thermophila)
- Cfap182b (11 kDa, Protein from Tetrahymena thermophila)
- Dna polymerase delta c4-type zinc-finger protein (31 kDa, Protein from Tetrahymena thermophila)
- Oj3 (14 kDa, Protein from Tetrahymena thermophila)
- Protofilament ribbon protein (34 kDa, Protein from Tetrahymena thermophila)
- Flagellar flij protein (12 kDa, Protein from Tetrahymena thermophila)
- Cfap20 (22 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 53 (60 kDa, Protein from Tetrahymena thermophila)
- Cfap21a (48 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 45 (59 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Ij34 (34 kDa, Protein from Tetrahymena thermophila)
- Cfam166a (25 kDa, Protein from Tetrahymena thermophila)
- B5b6_fmip (43 kDa, Protein from Tetrahymena thermophila)
- 48-nm repeat unit of microtubule doublet from tetrahymena thermophila strain cu428 (7 MDa, Cellular component from Tetrahymena thermophila)
- Rib26 (26 kDa, Protein from Tetrahymena thermophila)
- Stpg2 (33 kDa, Protein from Tetrahymena thermophila)
- Cfam166c (25 kDa, Protein from Tetrahymena thermophila)
- Oj2 (19 kDa, Protein from Tetrahymena thermophila)
- Sb1 (17 kDa, Protein from Tetrahymena thermophila)
- Rib27a (27 kDa, Protein from Tetrahymena thermophila)
- Cfam166b (17 kDa, Protein from Tetrahymena thermophila)
- Nucleoside diphosphate kinase (42 kDa, Protein from Tetrahymena thermophila)
- Cfap210 (61 kDa, Protein from Tetrahymena thermophila)
- Cfap77a (28 kDa, Protein from Tetrahymena thermophila)
- Rib57 (57 kDa, Protein from Tetrahymena thermophila)
- Parkin co-regulated protein pacrgb (28 kDa, Protein from Tetrahymena thermophila)
- Cfap161a (57 kDa, Protein from Tetrahymena thermophila)
- Rib35 (34 kDa, Protein from Tetrahymena thermophila)
- Cfap143 (30 kDa, Protein from Tetrahymena thermophila)
base module state 1 of Tetrahymena IFT-A
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8hmc
Q-score: 0.414
Ma Y, He J, Li S, Yao D, Huang C, Wu J, Lei M
Nat Commun (2023) 14 pp. 1506-1506 [ Pubmed: 36932088 DOI: doi:10.1038/s41467-023-37208-2 ]
- Zinc ion (65 Da, Ligand)
- Wd40 repeat protein (138 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 43 homolog (16 kDa, Protein from Tetrahymena thermophila)
- Tetratricopeptide repeat protein (154 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 122 homolog (143 kDa, Protein from Tetrahymena thermophila)
- Ift-a_base-1 (Complex from Tetrahymena thermophila)
base module state 2 of Tetrahymena IFT-A
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 8hmd
Q-score: 0.197
Ma Y, He J, Li S, Yao D, Huang C, Wu J, Lei M
Nat Commun (2023) 14 pp. 1506-1506 [ Pubmed: 36932088 DOI: doi:10.1038/s41467-023-37208-2 ]
- Zinc ion (65 Da, Ligand)
- Ift-a_base-2 (Complex from Tetrahymena thermophila)
- Wd40 repeat protein (138 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 43 homolog (16 kDa, Protein from Tetrahymena thermophila)
- Tetratricopeptide repeat protein (154 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 122 homolog (143 kDa, Protein from Tetrahymena thermophila)
head module state 1 of Tetrahymena IFT-A
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8hme
Q-score: 0.247
Ma Y, He J, Li S, Yao D, Huang C, Wu J, Lei M
Nat Commun (2023) 14 pp. 1506-1506 [ Pubmed: 36932088 DOI: doi:10.1038/s41467-023-37208-2 ]
- Zinc ion (65 Da, Ligand)
- Intraflagellar transporter (161 kDa, Protein from Tetrahymena thermophila)
- Wd40 repeat protein (158 kDa, Protein from Tetrahymena thermophila)
- Ift-a_head-1 (Complex from Tetrahymena thermophila)
- Intraflagellar transport protein 122 homolog (143 kDa, Protein from Tetrahymena thermophila)
head module state 2 of Tetrahymena IFT-A
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 8hmf
Q-score: 0.199
Ma Y, He J, Li S, Yao D, Huang C, Wu J, Lei M
Nat Commun (2023) 14 pp. 1506-1506 [ Pubmed: 36932088 DOI: doi:10.1038/s41467-023-37208-2 ]
- Zinc ion (65 Da, Ligand)
- Intraflagellar transporter (161 kDa, Protein from Tetrahymena thermophila)
- Wd40 repeat protein (158 kDa, Protein from Tetrahymena thermophila)
- Ift-a_head-2 (Complex from Tetrahymena thermophila)
- Intraflagellar transport protein 122 homolog (143 kDa, Protein from Tetrahymena thermophila)
Tetrahymena telomerase T3D2 structure at 3.3 Angstrom
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7lma
Q-score: 0.473
He Y, Wang Y, Liu B, Helmling C, Susac L, Cheng R, Zhou ZH, Feigon J
Nature (2021) 593 pp. 454-459 [ DOI: doi:10.1038/s41586-021-03529-9 Pubmed: 33981033 ]
- Zinc ion (65 Da, Ligand)
- Telomerase associated protein p50 (50 kDa, Protein from Tetrahymena thermophila)
- Telomerase la-related protein p65 (64 kDa, Protein from Tetrahymena thermophila)
- Telomerase reverse transcriptase (133 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb2 subunit (30 kDa, Protein from Tetrahymena thermophila)
- Telomere dna (9 kDa, DNA from Tetrahymena thermophila)
- Telomerase rna (50 kDa, RNA from Tetrahymena thermophila)
- Telomerase holoenzyme teb1 subunit (82 kDa, Protein from Tetrahymena thermophila)
- Tetrahymena telomerase t3d2 structure at 3.3 angstrom (Complex from Tetrahymena thermophila)
- Telomerase holoenzyme teb3 subunit (14 kDa, Protein from Tetrahymena thermophila)
Tetrahymena telomerase T5D5 structure at 3.8 Angstrom
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7lmb
Q-score: 0.403
He Y, Wang Y, Liu B, Helmling C, Susac L, Cheng R, Zhou ZH, Feigon J
Nature (2021) 593 pp. 454-459 [ DOI: doi:10.1038/s41586-021-03529-9 Pubmed: 33981033 ]
- Zinc ion (65 Da, Ligand)
- Telomerase associated protein p50 (50 kDa, Protein from Tetrahymena thermophila)
- Tetrahymena telomerase t5d5 structure (Complex from Tetrahymena thermophila)
- Telomerase la-related protein p65 (64 kDa, Protein from Tetrahymena thermophila)
- Telomere dna (6 kDa, DNA from Tetrahymena thermophila)
- Telomerase reverse transcriptase (133 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb2 subunit (30 kDa, Protein from Tetrahymena thermophila)
- Telomerase rna (50 kDa, RNA from Tetrahymena thermophila)
- Telomerase holoenzyme teb1 subunit (82 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb3 subunit (14 kDa, Protein from Tetrahymena thermophila)