Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8b6f
Q-score: 0.463
Muhleip A, Flygaard RK, Baradaran R, Haapanen O, Gruhl T, Tobiasson V, Marechal A, Sharma V, Amunts A
Nature (2023) 615 pp. 934-938 [ DOI: doi:10.1038/s41586-023-05817-y Pubmed: 36949187 ]
- Cx9c domain-containing protein (28 kDa, Protein from Tetrahymena thermophila SB210)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh-ubiquinone oxidoreductase chain 1 (32 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (23 kDa, Protein from Tetrahymena thermophila SB210)
- Chch domain-containing protein (13 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh-ubiquinone oxidoreductase 75 kda subunit (80 kDa, Protein from Tetrahymena thermophila SB210)
- Ndub4 (14 kDa, Protein from Tetrahymena thermophila SB210)
- Acyl-coa synthetase (amp-forming)/amp-acid ligase ii (36 kDa, Protein from Tetrahymena thermophila SB210)
- Thioredoxin (19 kDa, Protein from Tetrahymena thermophila SB210)
- Rnase iii domain-containing protein (35 kDa, Protein from Tetrahymena thermophila SB210)
- Dnaj domain protein (36 kDa, Protein from Tetrahymena thermophila SB210)
- Zinc-finger protein (15 kDa, Protein from Tetrahymena thermophila SB210)
- Ribosomal protein l51/s25/ci-b8 domain protein (12 kDa, Protein from Tetrahymena thermophila SB210)
- Transcription factor apfi protein, putative (39 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh-ubiquinone oxidoreductase chain 3 (14 kDa, Protein from Tetrahymena thermophila SB210)
- 2 iron, 2 sulfur cluster-binding protein (19 kDa, Protein from Tetrahymena thermophila SB210)
- Zinc ion (65 Da, Ligand)
- S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
- Nadh-ubiquinone oxidoreductase 1, chain, putative (28 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (8 kDa, Protein from Tetrahymena thermophila SB210)
- Ndub8 (24 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (52 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase subunit 9 (23 kDa, Protein from Tetrahymena thermophila SB210)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transmembrane protein, putative (29 kDa, Protein from Tetrahymena thermophila SB210)
- 37s ribosomal protein s25, mitochondrial (33 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase subunit 7 (51 kDa, Protein from Tetrahymena thermophila SB210)
- Ph domain-containing protein (15 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh:ubiquinone oxidoreductase complex (complex-i) from respiratory supercomplex of tetrahymena thermophila (1 MDa, Complex from Tetrahymena thermophila)
- Etc complex i subunit motif protein (24 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (24 kDa, Protein from Tetrahymena thermophila SB210)
- Nad-dependent epimerase/dehydratase family protein (41 kDa, Protein from Tetrahymena thermophila SB210)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Ndub6 (15 kDa, Protein from Tetrahymena thermophila SB210)
- Ndutt17 (13 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (15 kDa, Protein from Tetrahymena thermophila SB210)
- Nd1b (7 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh-ubiquinone oxidoreductase chain 4 (58 kDa, Protein from Tetrahymena thermophila SB210)
- Gamma-carbonic anhydrase (25 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf58 (13 kDa, Protein from Tetrahymena thermophila SB210)
- Acyl carrier protein (15 kDa, Protein from Tetrahymena thermophila SB210)
- Uridine-5'-diphosphate (404 Da, Ligand)
- Transmembrane protein, putative (9 kDa, Protein from Tetrahymena thermophila SB210)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Ndutt15 (25 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf65 (43 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase, putative (20 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (8 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein (24 kDa, Protein from Tetrahymena thermophila SB210)
- Ndutt16 (15 kDa, Protein from Tetrahymena thermophila SB210)
- Complex i-mnll (12 kDa, Protein from Tetrahymena thermophila SB210)
- Magnesium ion (24 Da, Ligand)
- Atp synthase subunit e, mitochondrial (11 kDa, Protein from Tetrahymena thermophila SB210)
- Flavin mononucleotide (456 Da, Ligand)
- Transmembrane protein, putative (16 kDa, Protein from Tetrahymena thermophila SB210)
- Cox assembly mitochondrial protein (17 kDa, Protein from Tetrahymena thermophila SB210)
- Gram domain protein (10 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase subunit 10 (18 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase subunit 5 (88 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase subunit 2 (20 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh-ubiquinone oxidoreductase 24 kda subunit (31 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (22 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (22 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh-ubiquinone oxidoreductase complex i, 21 kda subunit (17 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 (15 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (13 kDa, Protein from Tetrahymena thermophila SB210)
- Acyl carrier protein (16 kDa, Protein from Tetrahymena thermophila SB210)
- Lipid-a-disaccharide synthase (59 kDa, Protein from Tetrahymena thermophila SB210)
- 2-(hexadecanoyloxy)-1-[(phosphonooxy)methyl]ethyl hexadecanoate (648 Da, Ligand)
- Ndub10 (22 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (15 kDa, Protein from Tetrahymena thermophila SB210)
- Gamma-carbonic anhydrase (28 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (26 kDa, Protein from Tetrahymena thermophila SB210)
- Nduph2 (22 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (11 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf62 (30 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (21 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf57 (12 kDa, Protein from Tetrahymena thermophila SB210)
- Ndua13 (21 kDa, Protein from Tetrahymena thermophila SB210)
- Ndub15 (14 kDa, Protein from Tetrahymena thermophila SB210)
- Iron/sulfur cluster (351 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8b6g
Q-score: 0.402
Muhleip A, Flygaard RK, Baradaran R, Haapanen O, Gruhl T, Tobiasson V, Marechal A, Sharma V, Amunts A
Nature (2023) 615 pp. 934-938 [ DOI: doi:10.1038/s41586-023-05817-y Pubmed: 36949187 ]
- Succinate dehydrogenase (quinone) (36 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (7 kDa, Protein from Tetrahymena thermophila)
- Sdhtt3 (23 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (35 kDa, Protein from Tetrahymena thermophila)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Diphthamide synthesis protein (22 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (11 kDa, Protein from Tetrahymena thermophila)
- Sdhtt11 (5 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (11 kDa, Protein from Tetrahymena thermophila)
- Heme c (618 Da, Ligand)
- Nmra domain-containing protein (36 kDa, Protein from Tetrahymena thermophila)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Transmembrane protein, putative (9 kDa, Protein from Tetrahymena thermophila)
- Transposase (11 kDa, Protein from Tetrahymena thermophila)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Duf4885 domain-containing protein (12 kDa, Protein from Tetrahymena thermophila)
- Cytochrome b-c1 complex subunit 8 (7 kDa, Protein from Tetrahymena thermophila)
- Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (70 kDa, Protein from Tetrahymena thermophila)
- Sdhd (5 kDa, Protein from Tetrahymena thermophila)
- Fe3-s4 cluster (295 Da, Ligand)
- Succinate dehydrogenase complex (complex-ii) (305 kDa, Complex from Tetrahymena thermophila)
- Calcium ion (40 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Ubiquinone-8 (727 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8b6h
Q-score: 0.531
Muhleip A, Flygaard RK, Baradaran R, Haapanen O, Gruhl T, Tobiasson V, Marechal A, Sharma V, Amunts A
Nature (2023) 615 pp. 934-938 [ DOI: doi:10.1038/s41586-023-05817-y Pubmed: 36949187 ]
- Transmembrane protein, putative (20 kDa, Protein from Tetrahymena thermophila SB210)
- Coxtt9 (29 kDa, Protein from Tetrahymena thermophila SB210)
- Ctf/nf-i domain-containing protein (116 kDa, Protein from Tetrahymena thermophila SB210)
- Coxtt27 (23 kDa, Protein from Tetrahymena thermophila SB210)
- Iron-binding zinc finger cdgsh type protein (21 kDa, Protein from Tetrahymena thermophila SB210)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ymf75 (23 kDa, Protein from Tetrahymena thermophila SB210)
- Yflt domain-containing protein (19 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (12 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (26 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (15 kDa, Protein from Tetrahymena thermophila SB210)
- 39s ribosomal protein l9, mitochondrial (27 kDa, Protein from Tetrahymena thermophila SB210)
- Lysozyme (12 kDa, Protein from Tetrahymena thermophila SB210)
- Cytochrome c oxidase subunit vb protein (75 kDa, Protein from Tetrahymena thermophila SB210)
- Copper (ii) ion (63 Da, Ligand)
- Transmembrane protein, putative (16 kDa, Protein from Tetrahymena thermophila SB210)
- Coxbp,chromosome condensation regulator rcc1 repeat protein,chromosome condensation regulator rcc1 repeat protein (58 kDa, Protein from Tetrahymena thermophila SB210)
- Zf-tim10_ddp domain-containing protein (10 kDa, Protein from Tetrahymena thermophila SB210)
- Cullin domain-containing protein (8 kDa, Protein from Tetrahymena thermophila SB210)
- Structural protein (27 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (41 kDa, Protein from Tetrahymena thermophila SB210)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (28 kDa, Protein from Tetrahymena thermophila SB210)
- Dinuclear copper ion (127 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Oxoglutarate/malate translocator protein, putative (40 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (14 kDa, Protein from Tetrahymena thermophila SB210)
- Potassium ion (39 Da, Ligand)
- Transmembrane protein, putative (18 kDa, Protein from Tetrahymena thermophila SB210)
- Cytochrome c oxidase subunit 2 (72 kDa, Protein from Tetrahymena thermophila SB210)
- 2-(hexadecanoyloxy)-1-[(phosphonooxy)methyl]ethyl hexadecanoate (648 Da, Ligand)
- Carrier protein (37 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (15 kDa, Protein from Tetrahymena thermophila SB210)
- Coxtt12,transmembrane protein,transmembrane protein (25 kDa, Protein from Tetrahymena thermophila SB210)
- 2-oxoglutarate/malate carrier protein (36 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein (20 kDa, Protein from Tetrahymena thermophila SB210)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ymf68 (72 kDa, Protein from Tetrahymena thermophila SB210)
- Phage protein (14 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf70 (10 kDa, Protein from Tetrahymena thermophila SB210)
- Complex iii subunit vii (19 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (24 kDa, Protein from Tetrahymena thermophila SB210)
- Coxtt22 (17 kDa, Protein from Tetrahymena thermophila SB210)
- Surf1-like protein (47 kDa, Protein from Tetrahymena thermophila SB210)
- Coxtt10 (28 kDa, Protein from Tetrahymena thermophila SB210)
- Heme-a (852 Da, Ligand)
- Annexin (8 kDa, Protein from Tetrahymena thermophila SB210)
- Protein phosphatase 2c, putative (53 kDa, Protein from Tetrahymena thermophila SB210)
- Ymf67 (54 kDa, Protein from Tetrahymena thermophila SB210)
- Surf1-like protein (35 kDa, Protein from Tetrahymena thermophila SB210)
- Magnesium ion (24 Da, Ligand)
- Transmembrane protein, putative (57 kDa, Protein from Tetrahymena thermophila SB210)
- Tim10/ddp family zinc finger protein (8 kDa, Protein from Tetrahymena thermophila SB210)
- Abc transporter (10 kDa, Protein from Tetrahymena thermophila SB210)
- Cytochrome c oxidase subunit 1 (80 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (18 kDa, Protein from Tetrahymena thermophila SB210)
- Zf-tim10_ddp domain-containing protein (8 kDa, Protein from Tetrahymena thermophila SB210)
- Zinc ion (65 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Decapping nuclease (10 kDa, Protein from Tetrahymena thermophila SB210)
- Ubiquinone-8 (727 Da, Ligand)
- Cytochrome c oxidase dimer (complex-iv) from respiratory supercomplex of tetrahymena thermophila (3 MDa, Complex from Tetrahymena thermophila)
- Transposase (8 kDa, Protein from Tetrahymena thermophila SB210)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8, mitochondrial (37 kDa, Protein from Tetrahymena thermophila SB210)
- Cardiolipin (1 kDa, Ligand)
- Mobilization protein (23 kDa, Protein from Tetrahymena thermophila SB210)
- Coxtt28 (11 kDa, Protein from Tetrahymena thermophila SB210)
- Trab family protein (45 kDa, Protein from Tetrahymena thermophila SB210)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8b6j
Q-score: 0.402
Muhleip A, Flygaard RK, Baradaran R, Haapanen O, Gruhl T, Tobiasson V, Marechal A, Sharma V, Amunts A
Nature (2023) 615 pp. 934-938 [ DOI: doi:10.1038/s41586-023-05817-y Pubmed: 36949187 ]
- Uqcrtt2 (4 kDa, Protein from Tetrahymena thermophila SB210)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ubiquinol-cytochrome c reductase hinge protein (9 kDa, Protein from Tetrahymena thermophila SB210)
- Heme c (618 Da, Ligand)
- Apocytochrome b (50 kDa, Protein from Tetrahymena thermophila SB210)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Uqcrtt3/up1 (5 kDa, Protein from Tetrahymena thermophila SB210)
- Peptidase m16 inactive domain protein (58 kDa, Protein from Tetrahymena thermophila SB210)
- Rieske iron-sulfur protein, ubiquinol-cytochrome c reductase iron-sulfur subunit (30 kDa, Protein from Tetrahymena thermophila SB210)
- M16 family peptidase, putative (53 kDa, Protein from Tetrahymena thermophila SB210)
- Transmembrane protein, putative (7 kDa, Protein from Tetrahymena thermophila SB210)
- Uqcrtt1 (39 kDa, Protein from Tetrahymena thermophila SB210)
- Ubiquinone-8 (727 Da, Ligand)
- Transmembrane protein, putative (15 kDa, Protein from Tetrahymena thermophila SB210)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Transmembrane protein, putative (14 kDa, Protein from Tetrahymena thermophila SB210)
- Cardiolipin (1 kDa, Ligand)
- Cytochrome protein c1 (37 kDa, Protein from Tetrahymena thermophila SB210)
- Dimeric cytochrome bc1 complex (complex-iii2) (640 kDa, Complex from Tetrahymena thermophila)
Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - Fo-wing region
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6ynv
Q-score: 0.571
Flygaard RK, Muhleip A, Tobiasson V, Amunts A
Nat Commun (2020) 11 pp. 5342-5342 [ Pubmed: 33093501 DOI: doi:10.1038/s41467-020-18993-6 ]
- Mitochondrial atp synthase, fo-wing region (Complex from Tetrahymena thermophila)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Atptt1 (54 kDa, Protein from Tetrahymena thermophila)
Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - central stalk/cring
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ynw
Q-score: 0.444
Flygaard RK, Muhleip A, Tobiasson V, Amunts A
Nat Commun (2020) 11 pp. 5342-5342 [ Pubmed: 33093501 DOI: doi:10.1038/s41467-020-18993-6 ]
- Subunit gamma (32 kDa, Protein from Tetrahymena thermophila)
- Subunit delta (17 kDa, Protein from Tetrahymena thermophila)
- Subunit epsilon (7 kDa, Protein from Tetrahymena thermophila)
- Subunit c (8 kDa, Protein from Tetrahymena thermophila)
- Mitochondrial atp synthase, central stalk/c-ring (Complex from Tetrahymena thermophila)
Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - Fo-subcomplex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6ynx
Q-score: 0.617
Flygaard RK, Muhleip A, Tobiasson V, Amunts A
Nat Commun (2020) 11 pp. 5342-5342 [ Pubmed: 33093501 DOI: doi:10.1038/s41467-020-18993-6 ]
- Atptt11 (17 kDa, Protein from Tetrahymena thermophila)
- Atptt7 (26 kDa, Protein from Tetrahymena thermophila)
- Subunit i/j (24 kDa, Protein from Tetrahymena thermophila)
- Subunit d (26 kDa, Protein from Tetrahymena thermophila)
- Atptt10 (17 kDa, Protein from Tetrahymena thermophila)
- Inhibitor of f1 (if1) (12 kDa, Protein from Tetrahymena thermophila)
- Atptt2 (54 kDa, Protein from Tetrahymena thermophila)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (749 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Atptt4 (32 kDa, Protein from Tetrahymena thermophila)
- Atptt6 (29 kDa, Protein from Tetrahymena thermophila)
- Mitochondrial atp synthase, fo-subcomplex (Complex from Tetrahymena thermophila)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptt1 (54 kDa, Protein from Tetrahymena thermophila)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptt8 (21 kDa, Protein from Tetrahymena thermophila)
- Atptt9 (18 kDa, Protein from Tetrahymena thermophila)
- Cardiolipin (1 kDa, Ligand)
- Atptt3 (34 kDa, Protein from Tetrahymena thermophila)
- Subunit k (20 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Subunit b (43 kDa, Protein from Tetrahymena thermophila)
- Subunit a (52 kDa, Protein from Tetrahymena thermophila)
- Ubiquinone-8 (727 Da, Ligand)
- Atptt13 (16 kDa, Protein from Tetrahymena thermophila)
- Subunit f (24 kDa, Protein from Tetrahymena thermophila)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Atptt5 (31 kDa, Protein from Tetrahymena thermophila)
- Subunit 8 (12 kDa, Protein from Tetrahymena thermophila)
- Atptt12 (17 kDa, Protein from Tetrahymena thermophila)
Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - F1Fo dimer
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6yny
Q-score: 0.403
Flygaard RK, Muhleip A, Tobiasson V, Amunts A
Nat Commun (2020) 11 pp. 5342-5342 [ Pubmed: 33093501 DOI: doi:10.1038/s41467-020-18993-6 ]
- Atptt11 (17 kDa, Protein from Tetrahymena thermophila)
- Atptt7 (26 kDa, Protein from Tetrahymena thermophila)
- Subunit i/j (24 kDa, Protein from Tetrahymena thermophila)
- Subunit d (26 kDa, Protein from Tetrahymena thermophila)
- Atptt10 (17 kDa, Protein from Tetrahymena thermophila)
- Inhibitor of f1 (if1) (12 kDa, Protein from Tetrahymena thermophila)
- Subunit alpha (59 kDa, Protein from Tetrahymena thermophila)
- Subunit delta (17 kDa, Protein from Tetrahymena thermophila)
- Atptt2 (54 kDa, Protein from Tetrahymena thermophila)
- Oligomycin sensitivity-conferring protein (oscp) (24 kDa, Protein from Tetrahymena thermophila)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (749 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atptt4 (32 kDa, Protein from Tetrahymena thermophila)
- Atptt6 (29 kDa, Protein from Tetrahymena thermophila)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptt1 (54 kDa, Protein from Tetrahymena thermophila)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptt8 (21 kDa, Protein from Tetrahymena thermophila)
- Atptt9 (18 kDa, Protein from Tetrahymena thermophila)
- Cardiolipin (1 kDa, Ligand)
- Subunit gamma (32 kDa, Protein from Tetrahymena thermophila)
- Atptt3 (34 kDa, Protein from Tetrahymena thermophila)
- Subunit k (20 kDa, Protein from Tetrahymena thermophila)
- Mitochondrial atp synthase, f1fo dimer (Complex from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Subunit b (43 kDa, Protein from Tetrahymena thermophila)
- Subunit c (8 kDa, Protein from Tetrahymena thermophila)
- Subunit a (52 kDa, Protein from Tetrahymena thermophila)
- Subunit beta (53 kDa, Protein from Tetrahymena thermophila)
- Ubiquinone-8 (727 Da, Ligand)
- Atptt13 (16 kDa, Protein from Tetrahymena thermophila)
- Subunit f (24 kDa, Protein from Tetrahymena thermophila)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Atptt5 (31 kDa, Protein from Tetrahymena thermophila)
- Subunit 8 (12 kDa, Protein from Tetrahymena thermophila)
- Subunit epsilon (7 kDa, Protein from Tetrahymena thermophila)
- Atptt12 (17 kDa, Protein from Tetrahymena thermophila)
Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - F1Fo tetramer
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ynz
Q-score: 0.317
Flygaard RK, Muhleip A, Tobiasson V, Amunts A
Nat Commun (2020) 11 pp. 5342-5342 [ Pubmed: 33093501 DOI: doi:10.1038/s41467-020-18993-6 ]
- Atptt11 (17 kDa, Protein from Tetrahymena thermophila)
- Atptt7 (26 kDa, Protein from Tetrahymena thermophila)
- Subunit i/j (24 kDa, Protein from Tetrahymena thermophila)
- Atp synthase subunit beta (53 kDa, Protein from Tetrahymena thermophila)
- Subunit d (26 kDa, Protein from Tetrahymena thermophila)
- Atptt10 (17 kDa, Protein from Tetrahymena thermophila)
- Inhibitor of f1 (if1) (12 kDa, Protein from Tetrahymena thermophila)
- Subunit delta (17 kDa, Protein from Tetrahymena thermophila)
- Atptt2 (54 kDa, Protein from Tetrahymena thermophila)
- Oligomycin sensitivity-conferring protein (oscp) (24 kDa, Protein from Tetrahymena thermophila)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (749 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase f0 subunit 9 (8 kDa, Protein from Tetrahymena thermophila)
- Atptt4 (32 kDa, Protein from Tetrahymena thermophila)
- Atptt6 (29 kDa, Protein from Tetrahymena thermophila)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atptt1 (54 kDa, Protein from Tetrahymena thermophila)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Atptt8 (21 kDa, Protein from Tetrahymena thermophila)
- Ymf66 (52 kDa, Protein from Tetrahymena thermophila)
- Atptt9 (18 kDa, Protein from Tetrahymena thermophila)
- Cardiolipin (1 kDa, Ligand)
- Atptt3 (34 kDa, Protein from Tetrahymena thermophila)
- Subunit k (20 kDa, Protein from Tetrahymena thermophila)
- Atp synthase subunit gamma (32 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Subunit b (43 kDa, Protein from Tetrahymena thermophila)
- Mitochondrial atp synthase, f1fo tetramer (Complex from Tetrahymena thermophila)
- Atp synthase subunit alpha (59 kDa, Protein from Tetrahymena thermophila)
- Ubiquinone-8 (727 Da, Ligand)
- Atptt13 (16 kDa, Protein from Tetrahymena thermophila)
- Subunit f (24 kDa, Protein from Tetrahymena thermophila)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Atptt5 (31 kDa, Protein from Tetrahymena thermophila)
- Subunit epsilon (7 kDa, Protein from Tetrahymena thermophila)
- Ymf56 (12 kDa, Protein from Tetrahymena thermophila)
- Atptt12 (17 kDa, Protein from Tetrahymena thermophila)
Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - F1/peripheral stalk
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6yo0
Q-score: 0.512
Flygaard RK, Muhleip A, Tobiasson V, Amunts A
Nat Commun (2020) 11 pp. 5342-5342 [ Pubmed: 33093501 DOI: doi:10.1038/s41467-020-18993-6 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Atp synthase subunit alpha (59 kDa, Protein from Tetrahymena thermophila)
- Atptt13 (16 kDa, Protein from Tetrahymena thermophila)
- Atp synthase subunit beta (53 kDa, Protein from Tetrahymena thermophila)
- Subunit d (26 kDa, Protein from Tetrahymena thermophila)
- Atp synthase subunit gamma (32 kDa, Protein from Tetrahymena thermophila)
- Oligomycin sensitivity-conferring protein (oscp) (24 kDa, Protein from Tetrahymena thermophila)
- Inhibitor of f1 (if1) (12 kDa, Protein from Tetrahymena thermophila)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Subunit b (43 kDa, Protein from Tetrahymena thermophila)
- Mitochondrial atp synthase, f1/peripheral stalk (Complex from Tetrahymena thermophila)