Combined linker domain of N-DRC and associated proteins Tetrahymena
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8tid
Q-score: 0.072
Ghanaeian A, Majhi S, McCafferty CL, Nami B, Black CS, Yang SK, Legal T, Papoulas O, Janowska M, Valente-Paterno M, Marcotte EM, Wloga D, Bui KH
Nat Commun (2023) 14 pp. 5741-5741 [ DOI: doi:10.1038/s41467-023-41480-7 Pubmed: 37714832 ]
- Coiled-coil lobo-like protein, putative (101 kDa, Protein from Tetrahymena thermophila)
- Ef-hand calcium-binding domain protein (22 kDa, Protein from Tetrahymena thermophila)
- Growth-arrest-specific microtubule-binding protein (55 kDa, Protein from Tetrahymena thermophila)
- Flagellar associated protein (52 kDa, Protein from Tetrahymena thermophila)
- Dynein regulatory complex protein 1/2 n-terminal domain-containing protein (98 kDa, Protein from Tetrahymena thermophila)
- Wd40 domain protein (152 kDa, Protein from Tetrahymena thermophila)
- Aaa family atpase cdc48 subfamily protein (101 kDa, Protein from Tetrahymena thermophila)
- Wd40 domain protein (151 kDa, Protein from Tetrahymena thermophila)
- Growth-arrest-specific microtubule-binding protein (56 kDa, Protein from Tetrahymena thermophila)
- Duf4201 domain-containing protein (94 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil protein, putative (105 kDa, Protein from Tetrahymena thermophila)
- Combined linker domain of n-drc and associated proteins tetrahymena (Cell from Tetrahymena thermophila)
- Dynein regulatory complex protein 10 (51 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil domain-containing protein 153 (22 kDa, Protein from Tetrahymena thermophila)
- Flagellar associated protein (42 kDa, Protein from Tetrahymena thermophila)
- Flagella associated protein (114 kDa, Protein from Tetrahymena thermophila)
- Ef hand protein (124 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil protein, putative (60 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 91 (76 kDa, Protein from Tetrahymena thermophila)
- Cfap20 (22 kDa, Protein from Tetrahymena thermophila)
- L-shape (unknown-protein) (50 kDa, Protein from Tetrahymena thermophila)
- Dynein regulatory complex protein 9 (44 kDa, Protein from Tetrahymena thermophila)
- Calmodulin 7-2 (23 kDa, Protein from Tetrahymena thermophila)
- Kinase domain protein (39 kDa, Protein from Tetrahymena thermophila)
- Lrrc48 protein (68 kDa, Protein from Tetrahymena thermophila)
Baseplate of Nexin-dynein regulatory complex from Tetrahymena thermophila
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8tek
Q-score: 0.273
Ghanaeian A, Majhi S, McCafferty CL, Nami B, Black CS, Yang SK, Legal T, Papoulas O, Janowska M, Valente-Paterno M, Marcotte EM, Wloga D, Bui KH
Nat Commun (2023) 14 pp. 5741-5741 [ DOI: doi:10.1038/s41467-023-41480-7 Pubmed: 37714832 ]
- Cilia- and flagella-associated protein 91 (76 kDa, Protein from Tetrahymena thermophila)
- Cfap20 (22 kDa, Protein from Tetrahymena thermophila)
- Growth-arrest-specific microtubule-binding protein (56 kDa, Protein from Tetrahymena thermophila)
- Duf4201 domain-containing protein (94 kDa, Protein from Tetrahymena thermophila)
- Growth-arrest-specific microtubule-binding protein (55 kDa, Protein from Tetrahymena thermophila)
- Baseplate of nexin-dynein regulatory complex from tetrahymena thermophila (Cellular component from Tetrahymena thermophila)
- Coiled-coil protein, putative (105 kDa, Protein from Tetrahymena thermophila)
- Flagellar associated protein (42 kDa, Protein from Tetrahymena thermophila)
- Dynein regulatory complex protein 1/2 n-terminal domain-containing protein (98 kDa, Protein from Tetrahymena thermophila)
- Flagella associated protein (114 kDa, Protein from Tetrahymena thermophila)
- Coiled-coil protein, putative (60 kDa, Protein from Tetrahymena thermophila)
Structure of LARP7 protein p65-telomerase RNA complex in telomerase
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8gap
Q-score: 0.323
Wang Y, He Y, Wang Y, Yang Y, Singh M, Eichhorn CD, Cheng X, Jiang YX, Zhou ZH, Feigon J
J Mol Biol (2023) 435 pp. 168044-168044 [ Pubmed: 37330293 DOI: doi:10.1016/j.jmb.2023.168044 ]
- Tetrahymena telomerase holoenzyme (Complex from Tetrahymena thermophila)
- Telomerase associated protein p50 (50 kDa, Protein from Tetrahymena thermophila)
- Zinc ion (65 Da, Ligand)
- Telomerase la-related protein p65 (64 kDa, Protein from Tetrahymena thermophila)
- Telomere dna (9 kDa, DNA from synthetic construct)
- Telomerase reverse transcriptase (133 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb2 subunit (30 kDa, Protein from Tetrahymena thermophila)
- Telomerase rna (50 kDa, RNA from Tetrahymena thermophila)
- Telomerase holoenzyme teb1 subunit (82 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb3 subunit (14 kDa, Protein from Tetrahymena thermophila)
48-nm doublet microtubule from Tetrahymena thermophila strain K40R
Kubo S, Black CS, Joachimiak E, Yang SK, Legal T, Peri K, Khalifa AAZ, Ghanaeian A, McCafferty CL, Valente-Paterno M, De Bellis C, Huynh PM, Fan Z, Marcotte EM, Wloga D, Bui KH
Nat Commun (2023) 14 pp. 2168-2168 [ DOI: doi:10.1038/s41467-023-37868-0 Pubmed: 37061538 ]
- Cilia- and flagella-associated protein 52 (73 kDa, Protein from Tetrahymena thermophila)
- B2b3_fmip (31 kDa, Protein from Tetrahymena thermophila)
- Nebulin (61 kDa, Protein from Tetrahymena thermophila)
- Rib27b (26 kDa, Protein from Tetrahymena thermophila)
- Cfap127 (55 kDa, Protein from Tetrahymena thermophila)
- Cfap129 (31 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Flagellar microtugule protofilament ribbon protein (72 kDa, Protein from Tetrahymena thermophila)
- Tubulin beta chain (49 kDa, Protein from Tetrahymena thermophila)
- Cfap112a (45 kDa, Protein from Tetrahymena thermophila)
- Parkin co-regulated protein pacrga (36 kDa, Protein from Tetrahymena thermophila)
- Tubulin alpha chain (49 kDa, Protein from Tetrahymena thermophila)
- Cfap115 (110 kDa, Protein from Tetrahymena thermophila)
- Cfap182a (20 kDa, Protein from Tetrahymena thermophila)
- Rib43a protein (17 kDa, Protein from Tetrahymena thermophila)
- Rib72b (60 kDa, Protein from Tetrahymena thermophila)
- Rib38 (38 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Stpg1a (42 kDa, Protein from Tetrahymena thermophila)
- Cfap107 (21 kDa, Protein from Tetrahymena thermophila)
- Rib22 (22 kDa, Protein from Tetrahymena thermophila)
- Cfap182b (11 kDa, Protein from Tetrahymena thermophila)
- Dna polymerase delta c4-type zinc-finger protein (31 kDa, Protein from Tetrahymena thermophila)
- Oj3 (14 kDa, Protein from Tetrahymena thermophila)
- Protofilament ribbon protein (34 kDa, Protein from Tetrahymena thermophila)
- Flagellar flij protein (12 kDa, Protein from Tetrahymena thermophila)
- Cfap20 (22 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 53 (60 kDa, Protein from Tetrahymena thermophila)
- Cfap21a (48 kDa, Protein from Tetrahymena thermophila)
- Cilia- and flagella-associated protein 45 (59 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Ij34 (34 kDa, Protein from Tetrahymena thermophila)
- Cfam166a (25 kDa, Protein from Tetrahymena thermophila)
- B5b6_fmip (43 kDa, Protein from Tetrahymena thermophila)
- 48-nm repeat unit of microtubule doublet from tetrahymena thermophila strain cu428 (7 MDa, Cellular component from Tetrahymena thermophila)
- Rib26 (26 kDa, Protein from Tetrahymena thermophila)
- Stpg2 (33 kDa, Protein from Tetrahymena thermophila)
- Cfam166c (25 kDa, Protein from Tetrahymena thermophila)
- Oj2 (19 kDa, Protein from Tetrahymena thermophila)
- Sb1 (17 kDa, Protein from Tetrahymena thermophila)
- Rib27a (27 kDa, Protein from Tetrahymena thermophila)
- Cfam166b (17 kDa, Protein from Tetrahymena thermophila)
- Nucleoside diphosphate kinase (42 kDa, Protein from Tetrahymena thermophila)
- Cfap210 (61 kDa, Protein from Tetrahymena thermophila)
- Cfap77a (28 kDa, Protein from Tetrahymena thermophila)
- Rib57 (57 kDa, Protein from Tetrahymena thermophila)
- Parkin co-regulated protein pacrgb (28 kDa, Protein from Tetrahymena thermophila)
- Cfap161a (57 kDa, Protein from Tetrahymena thermophila)
- Rib35 (34 kDa, Protein from Tetrahymena thermophila)
- Cfap143 (30 kDa, Protein from Tetrahymena thermophila)
base module state 1 of Tetrahymena IFT-A
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8hmc
Q-score: 0.414
Ma Y, He J, Li S, Yao D, Huang C, Wu J, Lei M
Nat Commun (2023) 14 pp. 1506-1506 [ Pubmed: 36932088 DOI: doi:10.1038/s41467-023-37208-2 ]
- Zinc ion (65 Da, Ligand)
- Wd40 repeat protein (138 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 43 homolog (16 kDa, Protein from Tetrahymena thermophila)
- Tetratricopeptide repeat protein (154 kDa, Protein from Tetrahymena thermophila)
- Intraflagellar transport protein 122 homolog (143 kDa, Protein from Tetrahymena thermophila)
- Ift-a_base-1 (Complex from Tetrahymena thermophila)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8b6g
Q-score: 0.402
Muhleip A, Flygaard RK, Baradaran R, Haapanen O, Gruhl T, Tobiasson V, Marechal A, Sharma V, Amunts A
Nature (2023) 615 pp. 934-938 [ DOI: doi:10.1038/s41586-023-05817-y Pubmed: 36949187 ]
- Succinate dehydrogenase (quinone) (36 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (7 kDa, Protein from Tetrahymena thermophila)
- Sdhtt3 (23 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (35 kDa, Protein from Tetrahymena thermophila)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Diphthamide synthesis protein (22 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (11 kDa, Protein from Tetrahymena thermophila)
- Sdhtt11 (5 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (11 kDa, Protein from Tetrahymena thermophila)
- Heme c (618 Da, Ligand)
- Nmra domain-containing protein (36 kDa, Protein from Tetrahymena thermophila)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Transmembrane protein, putative (9 kDa, Protein from Tetrahymena thermophila)
- Transposase (11 kDa, Protein from Tetrahymena thermophila)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Duf4885 domain-containing protein (12 kDa, Protein from Tetrahymena thermophila)
- Cytochrome b-c1 complex subunit 8 (7 kDa, Protein from Tetrahymena thermophila)
- Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (70 kDa, Protein from Tetrahymena thermophila)
- Sdhd (5 kDa, Protein from Tetrahymena thermophila)
- Fe3-s4 cluster (295 Da, Ligand)
- Succinate dehydrogenase complex (complex-ii) (305 kDa, Complex from Tetrahymena thermophila)
- Calcium ion (40 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Ubiquinone-8 (727 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
Tetrahymena telomerase with CST
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7uy5
Q-score: 0.422
He Y, Song H, Chan H, Liu B, Wang Y, Susac L, Zhou ZH, Feigon J
Nature (2022) 608 pp. 813-818 [ Pubmed: 35831498 DOI: doi:10.1038/s41586-022-04931-7 ]
- Telomerase-associated protein of 75 kda (73 kDa, Protein from Tetrahymena thermophila)
- Zinc ion (65 Da, Ligand)
- Telomerase associated protein p50 (50 kDa, Protein from Tetrahymena thermophila)
- Telomerase-associated protein of 19 kda (19 kDa, Protein from Tetrahymena thermophila)
- Tetrahymena telomerase holoenzyme (Complex from Tetrahymena thermophila)
- Telomerase la-related protein p65 (64 kDa, Protein from Tetrahymena thermophila)
- Telomere dna (9 kDa, DNA from Tetrahymena thermophila)
- Telomerase reverse transcriptase (133 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb2 subunit (30 kDa, Protein from Tetrahymena thermophila)
- Telomerase rna (50 kDa, RNA from Tetrahymena thermophila)
- Telomerase-associated protein of 45 kda (43 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb1 subunit (82 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb3 subunit (14 kDa, Protein from Tetrahymena thermophila)
Cryo-EM structure of Tetrahymena thermophila mitochondrial complex IV, composite dimer model
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 7w5z
Q-score: 0.568
Zhou L, Maldonado M, Padavannil A, Guo F, Letts JA
Science (2022) 376 pp. 831-839 [ DOI: doi:10.1126/science.abn7747 Pubmed: 35357889 ]
- Cytochrome c oxidase subunit tt19 (19 kDa, Protein from Tetrahymena thermophila)
- Protein phosphatase 2c, putative (53 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit tt12 (26 kDa, Protein from Tetrahymena thermophila)
- 2-oxoglutarate/malate carrier protein (36 kDa, Protein from Tetrahymena thermophila)
- Oxoglutarate/malate translocator protein, putative (40 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase small tim subunit 6 (8 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit vb protein (75 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit tt22 (17 kDa, Protein from Tetrahymena thermophila)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ymf68 (72 kDa, Protein from Tetrahymena thermophila)
- Unknown peptide (8 kDa, Protein from Tetrahymena thermophila)
- Surf1-like protein (35 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit tt15 (23 kDa, Protein from Tetrahymena thermophila)
- Ctf/nf-i domain-containing protein (116 kDa, Protein from Tetrahymena thermophila)
- Ymf75 (23 kDa, Protein from Tetrahymena thermophila)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome c oxidase subunit tt10 (28 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit tt16 (20 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (26 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (18 kDa, Protein from Tetrahymena thermophila)
- Carrier protein (37 kDa, Protein from Tetrahymena thermophila)
- Uncharacterized protein (20 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase small tim subunit 2 (8 kDa, Protein from Tetrahymena thermophila)
- Unknown peptide (2 kDa, Protein from Tetrahymena thermophila)
- Surf1-like protein (47 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit 6b-like (10 kDa, Protein from Tetrahymena thermophila)
- Iron-binding zinc finger cdgsh type protein (21 kDa, Protein from Tetrahymena thermophila)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Ymf67 (54 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (24 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit tt25 (12 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit tt18 (20 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit 6b (27 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (417 kDa, Protein from Tetrahymena thermophila)
- Heme-a (852 Da, Ligand)
- Cytochrome c oxidase subunit tt7 (37 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (15 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit tt11 (27 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase small tim subunit 5 (8 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (41 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase dimer (2 MDa, Complex from Tetrahymena thermophila)
- Tim10/ddp family zinc finger protein (8 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Ymf70 (10 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit tt9 (29 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit tt26 (10 kDa, Protein from Tetrahymena thermophila)
- Unknown peptide (2 kDa, Protein from Tetrahymena thermophila)
- Cyclic nucleotide-binding domain protein (172 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase small tim subunit 4 (8 kDa, Protein from Tetrahymena thermophila)
- Zinc ion (65 Da, Ligand)
- Transmembrane protein, putative (20 kDa, Protein from Tetrahymena thermophila)
- Trab family protein (45 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (18 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (16 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit 2 (72 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase small tim subunit 3 (10 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (12 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (57 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (14 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit 7c (28 kDa, Protein from Tetrahymena thermophila)
- Transmembrane protein, putative (15 kDa, Protein from Tetrahymena thermophila)
- Protein transporter sec61 alpha subunit (53 kDa, Protein from Tetrahymena thermophila)
- Cardiolipin (1 kDa, Ligand)
- Cytochrome c oxidase acyl carrier-like subunit (14 kDa, Protein from Tetrahymena thermophila)
- Chromosome condensation regulator rcc1 repeat protein (41 kDa, Protein from Tetrahymena thermophila)
- Cytochrome c oxidase subunit 1 (80 kDa, Protein from Tetrahymena thermophila)
16-nm repeat microtubule doublet
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7mwg
Q-score: 0.438
Rao Q, Han L, Wang Y, Chai P, Kuo YW, Yang R, Hu F, Yang Y, Howard J, Zhang K
Nat Struct Mol Biol (2021) 28 pp. 799-810 [ DOI: doi:10.1038/s41594-021-00656-9 Pubmed: 34556869 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin alpha chain (49 kDa, Protein from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- 16-nm repeat microtubule doublet (Complex from Tetrahymena thermophila)
- Water (18 Da, Ligand)
Tetrahymena telomerase T3D2 structure at 3.3 Angstrom
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7lma
Q-score: 0.473
He Y, Wang Y, Liu B, Helmling C, Susac L, Cheng R, Zhou ZH, Feigon J
Nature (2021) 593 pp. 454-459 [ DOI: doi:10.1038/s41586-021-03529-9 Pubmed: 33981033 ]
- Zinc ion (65 Da, Ligand)
- Telomerase associated protein p50 (50 kDa, Protein from Tetrahymena thermophila)
- Telomerase la-related protein p65 (64 kDa, Protein from Tetrahymena thermophila)
- Telomerase reverse transcriptase (133 kDa, Protein from Tetrahymena thermophila)
- Telomerase holoenzyme teb2 subunit (30 kDa, Protein from Tetrahymena thermophila)
- Telomere dna (9 kDa, DNA from Tetrahymena thermophila)
- Telomerase rna (50 kDa, RNA from Tetrahymena thermophila)
- Telomerase holoenzyme teb1 subunit (82 kDa, Protein from Tetrahymena thermophila)
- Tetrahymena telomerase t3d2 structure at 3.3 angstrom (Complex from Tetrahymena thermophila)
- Telomerase holoenzyme teb3 subunit (14 kDa, Protein from Tetrahymena thermophila)