The FBF-2/LST-1/gld-1 RNA complex (one FBF-2)
Qiu C, Crittenden SL, Carrick BH, Dillard LB, Costa Dos Santos SJ, Dandey VP, Dutcher RC, Viverette EG, Wine RN, Woodworth J, Campbell ZT, Wickens M, Borgnia MJ, Kimble J, Hall TMT
Nat Commun (2025) 16 pp. 123-123 [ DOI: doi:10.1038/s41467-024-55526-x Pubmed: 39747099 ]
The FBF-2/LST-1/gld-1 RNA complex (two FBF-2)
Qiu C, Crittenden SL, Carrick BH, Dillard LB, Costa Dos Santos SJ, Dandey VP, Dutcher RC, Viverette EG, Wine RN, Woodworth J, Campbell ZT, Wickens M, Borgnia MJ, Kimble J, Hall TMT
Nat Commun (2025) 16 pp. 123-123 [ DOI: doi:10.1038/s41467-024-55526-x Pubmed: 39747099 ]
- Gld-1 rna (RNA from Caenorhabditis elegans)
- Lst-1 (Protein from Caenorhabditis elegans)
- Ternary complex of fbf-2 with lst-1 and rna (Complex from Caenorhabditis elegans)
- Fbf-2 (Protein from Caenorhabditis elegans)
ATAT-2 bound MEC-12/MEC-7 microtubule
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8y9f
Q-score: 0.446
Luo J, Lam WH, Yu D, Chao VC, Zopfi MN, Khoo CJ, Zhao C, Yan S, Liu Z, Li XD, Zheng C, Zhai Y, Ti SC
Nat Struct Mol Biol (2024) [ Pubmed: 39496813 DOI: doi:10.1038/s41594-024-01406-3 ]
- Tubulin beta-1 chain (49 kDa, Protein from Caenorhabditis elegans)
- Alpha-tubulin n-acetyltransferase 2 (30 kDa, Protein from Caenorhabditis elegans)
- Tubulin alpha-3 chain (50 kDa, Protein from Caenorhabditis elegans)
- Mec-12/mec-7 microtubule in complex with full-length atat-2 (Complex from Caenorhabditis elegans)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Tubulin alpha-3 chain (50 kDa, Protein from Caenorhabditis elegans)
ATAT-2 bound MEC-12/MEC-7 microtubule without acetyl-CoA
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8yaj
Q-score: 0.453
Luo J, Lam WH, Yu D, Chao VC, Zopfi MN, Khoo CJ, Zhao C, Yan S, Liu Z, Li XD, Zheng C, Zhai Y, Ti SC
Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01406-3 Pubmed: 39496813 ]
- Piperazine-n,n'-bis(2-ethanesulfonic acid) (302 Da, Ligand)
- Tubulin alpha-3 chain (50 kDa, Protein from Caenorhabditis elegans)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta-1 chain (49 kDa, Protein from Caenorhabditis elegans)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Alpha tat2 bound mec-12/mec-7 microtubules withour acetyl-coa (Complex from Caenorhabditis elegans)
- Alpha-tubulin n-acetyltransferase 2 (30 kDa, Protein from Caenorhabditis elegans)
ATAT-2 bound K40Q MEC-12/MEC-7 microtubule
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8yal
Q-score: 0.477
Luo J, Lam WH, Yu D, Chao VC, Zopfi MN, Khoo CJ, Zhao C, Yan S, Liu Z, Li XD, Zheng C, Zhai Y, Ti SC
Nat Struct Mol Biol (2024) [ Pubmed: 39496813 DOI: doi:10.1038/s41594-024-01406-3 ]
- Tubulin beta-1 chain (49 kDa, Protein from Caenorhabditis elegans)
- Alpha-tubulin n-acetyltransferase 2 (30 kDa, Protein from Caenorhabditis elegans)
- Tubulin alpha-3 chain (50 kDa, Protein from Caenorhabditis elegans)
- Acetyl coenzyme *a (809 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- K40q mec-12/mec-7 microtubule complexed with alpha tat2 (Complex from Caenorhabditis elegans)
ATAT-2 bound K40R MEC-12/MEC-7 microtubule
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8yar
Q-score: 0.363
Luo J, Lam WH, Yu D, Chao VC, Zopfi MN, Khoo CJ, Zhao C, Yan S, Liu Z, Li XD, Zheng C, Zhai Y, Ti SC
Nat Struct Mol Biol (2024) [ Pubmed: 39496813 DOI: doi:10.1038/s41594-024-01406-3 ]
- Tubulin beta-1 chain (49 kDa, Protein from Caenorhabditis elegans)
- Alpha-tubulin n-acetyltransferase 2 (30 kDa, Protein from Caenorhabditis elegans)
- Acetyl coenzyme *a (809 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- K40r mec-12/mec-7 microtubule in complex with luminal atat-2 (Complex from Caenorhabditis elegans)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Tubulin alpha-3 chain (50 kDa, Protein from Caenorhabditis elegans)
High-resolution C. elegans 80S ribosome structure - class 1
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9cai
Q-score: 0.575
Sehgal E, Wohlenberg C, Soukup EM, Viscardi MJ, Serrao VHB, Arribere JA
RNA (2024) 30 pp. 1513-1528 [ Pubmed: 39209556 DOI: doi:10.1261/rna.080103.124 ]
- Large ribosomal subunit protein el6 (24 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el30 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul24 (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul30 (28 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es27 (9 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul23b (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el43 (10 kDa, Protein from Caenorhabditis elegans)
- Ribosomal protein l37 (10 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es21 (9 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul3 (45 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us17 (17 kDa, Protein from Caenorhabditis elegans)
- Mrna (3 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein el18 (21 kDa, Protein from Caenorhabditis elegans)
- Caenorhabditis elegans 80s ribosome (Complex from Caenorhabditis elegans)
- Plectin/s10 n-terminal domain-containing protein (16 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul29 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es28 (7 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es6 (28 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el20 (21 kDa, Protein from Caenorhabditis elegans)
- El41 (3 kDa, Protein from Caenorhabditis elegans)
- Spermidine (145 Da, Ligand)
- Large ribosomal subunit protein el8 (30 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us19 (17 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es17 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us10 (13 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us11 (16 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es26 (13 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el15 (24 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el21 (18 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el31 (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us3 (27 kDa, Protein from Caenorhabditis elegans)
- Ribosomal protein, small subunit (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es4 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el33 (13 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul14 (14 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul15 (16 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us14 (6 kDa, Protein from Caenorhabditis elegans)
- 5s rrna (38 kDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein es24 (14 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul5b (22 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul16 (24 kDa, Protein from Caenorhabditis elegans)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- Large ribosomal subunit protein ul2 (28 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-ribosomal protein el40 fusion protein (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us7 (23 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es12 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el39 (6 kDa, Protein from Caenorhabditis elegans)
- 28s rrna (1 MDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein es25 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el14 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul6 (21 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es7 (22 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el38 (8 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es1 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el19 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el42 (12 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el27 (15 kDa, Protein from Caenorhabditis elegans)
- Trna (24 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein ul13 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el24 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul22 (21 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-like protein 1-ribosomal protein es31 fusion protein (18 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us5 (29 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el36 (11 kDa, Protein from Caenorhabditis elegans)
- 5.8s rrna (49 kDa, RNA from Caenorhabditis elegans)
- Large ribosomal subunit protein ul18 (33 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el22 (14 kDa, Protein from Caenorhabditis elegans)
- 18s rrna (565 kDa, RNA from Caenorhabditis elegans)
- Small ribosomal subunit protein us13 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el13 (23 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es19 (16 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us15 (17 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el34 (12 kDa, Protein from Caenorhabditis elegans)
- 60s ribosomal protein l29 (7 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us9 (16 kDa, Protein from Caenorhabditis elegans)
- Ubiquitin-like domain-containing protein (14 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us2 (30 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein es8 (23 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein el32 (15 kDa, Protein from Caenorhabditis elegans)
- Large ribosomal subunit protein ul4 (38 kDa, Protein from Caenorhabditis elegans)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Caenorhabditis elegans)
Cryo-electron tomography of wildtype LAF-1 RGG domain protein condensates with fibrous necks
Rizvi A, Favetta B, Jaber N, Lee YK, Jiang J, Idris NS, Schuster BS, Dai W, Patterson JP
Nanoscale (2024) 16 pp. 16706-16717 [ Pubmed: 39171763 DOI: doi:10.1039/d4nr01877j ]
Cryo-Electron Tomography of Wildtype LAF-1 RGG Domain Condensate with Core/Shell Structure
Rizvi A, Favetta B, Jaber N, Lee YK, Jiang J, Idris NS, Schuster BS, Dai W, Patterson JP
Nanoscale (2024) 16 pp. 16706-16717 [ Pubmed: 39171763 DOI: doi:10.1039/d4nr01877j ]
Cryo-Electron Tomography of Wildtype LAF-1 RGG domain Condensate
Rizvi A, Favetta B, Jaber N, Lee YK, Jiang J, Idris NS, Schuster BS, Dai W, Patterson JP
Nanoscale (2024) 16 pp. 16706-16717 [ Pubmed: 39171763 DOI: doi:10.1039/d4nr01877j ]